New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4932141	37 (0.910)	3 (0.080)	3/322	NT	6.9%	coding (77/741 nt)	fliA	RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons
	?	AE015451	= 4932230	45 (1.150)					coding (818/834 nt)	PP_4342	flagellar synthesis regulator, putative ATPase

GCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCAACGTCAAGGAAGCGGTCGGTGAC  >  AE015451/4932014‑4932462                                                                                                                                                                                                                         |                                                                                                                                                                                                                                         gcCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCaa                                                                                                                                                                                                                       >  1:610109/1‑236 (MQ=255)                            cACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGcc                                                                                                                                                                                            >  1:653130/1‑236 (MQ=255)                                  cagcagGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCcgcgcg                                                                                                                                                                                       >  1:404184/1‑235 (MQ=255)                                  cagcagGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCgg                                                                                                                                                                                      >  1:189053/1‑236 (MQ=255)                                           gATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATtggctg                                                                                                                                                                              >  1:583649/1‑235 (MQ=255)                                            aTCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCCTAGTACGGGTCCCGcgctggcg                                                                                                                                                                                                                                  <  2:240795‑M2/182‑9 (MQ=255)                                                  ccGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGcgct                                                                                                                                                                                                                                      >  2:22745‑M2/1‑168 (MQ=255)                                                       cTGGATCAGGTCGTCGACCTGCACGTGGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGcgctggt                                                                                                                                                                                                                                   >  2:116709‑M2/1‑163 (MQ=255)                                                         ggATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACaaa                                                                                                                                                                                                           <  1:502181/192‑1 (MQ=255)                                                         ggATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACaaa                                                                                                                                                                                                           >  2:502180/1‑192 (MQ=255)                                                         ggATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGGCCcg                                                                                                                                                                                                                                          >  2:205363/1‑161 (MQ=255)                                                             cAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTTGCAGCGGCCAGCTGTc                                                                                                                                                              >  1:234021/1‑233 (MQ=255)                                                               ggTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCt                                                                                                                                                         >  1:492458/1‑236 (MQ=255)                                                                  ccTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCtt                                                                                                                                                        >  2:636247/1‑234 (MQ=255)                                                                            cgcGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGTACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGGAGCGGcc                                                                                                                                                                     <  2:752516/209‑1 (MQ=255)                                                                              cGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCt                                                                                                                                          >  1:471098/1‑236 (MQ=255)                                                                                tgggCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTg                                                                                                                                                                <  2:24824/210‑1 (MQ=255)                                                                                   gCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAg                                                                                                                                     >  1:306942/1‑236 (MQ=255)                                                                                     cGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTggg                                                                                                                                                                                                                                >  2:331481/1‑143 (MQ=255)                                                                                         aaGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAg                                                                                                                                >  1:617819/1‑235 (MQ=255)                                                                                                ccAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAgc                                                                                                                                                                                                                     <  2:440092/143‑1 (MQ=255)                                                                                                            aGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGAt                                                                                                                                                                                    >  2:36893/1‑164 (MQ=255)                                                                                                               tggcgcgcttgaCCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGcgctcgtc                                                                                                                                                                                                                                  <  2:53903‑M2/111‑9 (MQ=255)                                                                                                               cGATGCGCTTGACCAGCGGGGCGTAGCGCTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGCACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGCTGCACCAAGCGCTCGACAAAGAACTCCAGACgg                                                                                                                                                                                              >  2:97306/1‑151 (MQ=255)                                                                                                                gATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGGACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCa                                                                                                                                                                    >  2:259297/1‑176 (MQ=255)                                                                                                                    cgcTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAgcgcgc                                                                                                                           >  1:604024/1‑213 (MQ=255)                                                                                                                            cAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTG‑AGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCa                                                                                           <  1:310396/236‑1 (MQ=255)                                                                                                                             aGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAgcgcgc                                                                                                                           >  1:1395/1‑204 (MQ=255)                                                                                                                                         cGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCGCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGcc                                                                                                                                                                     <  2:33962/150‑1 (MQ=255)                                                                                                                                                  aGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAg                                                                                                               <  2:187422/195‑1 (MQ=255)                                                                                                                                                   gCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAgc                                                                                                                               <  2:404183/178‑1 (MQ=255)                                                                                                                                                        tACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGcgca                                                                  <  2:586388/234‑1 (MQ=255)                                                                                                                                                             ggCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCa                                                                                           <  2:523411/204‑1 (MQ=255)                                                                                                                                                                 tCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGcc                                                                         <  2:306941/218‑1 (MQ=255)                                                                                                                                                                 tCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGcgcacg                                                                >  2:706950/1‑227 (MQ=255)                                                                                                                                                                    ttCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGcgctggtcaagcgcatcgcctaccacctgttggcgcgcttgccggccaacgtgcaggtcgaggacctgatccaggccggca                                                                                                                                                         >  2:562097‑M2/1‑54 (MQ=255)                                                                                                                                                                    ttCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGcgctggtcaagcgcatcgcctaccacctgttggcgcgcttgccggccaacgtgcaggtcgaggacctgatccaggccggca                                                                                                                                                         <  1:562098‑M2/135‑82 (MQ=255)                                                                                                                                                                     tCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAg                                                                                                                   >  2:373098/1‑172 (MQ=255)                                                                                                                                                                     tCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTacg                                                   >  1:440230/1‑236 (MQ=255)                                                                                                                                                                       gccgccCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGc                                                                                                                                                                         <  2:225432/116‑1 (MQ=255)                                                                                                                                                                         cgccCGGCTGTACAGCTTGAGGCCGCTGGCGTGCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTacgg                                                  <  2:617818/233‑1 (MQ=255)                                                                                                                                                                              ggCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACGCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGACGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTactg                                                  <  2:402143/228‑3 (MQ=255)                                                                                                                                                                                 tGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGTCAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCAccc                                        <  1:732811/235‑1 (MQ=255)                                                                                                                                                                                                cGCTGGCGTTCATAGTACGGGTCCCGcgctggtcaagcgcatcgcctaccacctgttggcgcgcttgccggccaacgtgcaggtcgaggacctgatccaggccggcatgatcggcctgctggaagtggccaacaaatacgacgccagcaagggcgccagctttgagacctacgccggcatccgcattcgcgcggccatgctggacgaagagcgcaaa                                           <  1:221310‑M2/217‑192 (MQ=255)                                                                                                                                                                                                cGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGc                          >  2:650970/1‑234 (MQ=255)                                                                                                                                                                                                cGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCaa                        >  1:704609/1‑236 (MQ=255)                                                                                                                                                                                                cGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCaa                        >  1:706045/1‑236 (MQ=255)                                                                                                                                                                                                cGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCaa                        >  1:217023/1‑236 (MQ=255)                                                                                                                                                                                                     gCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTa                                   >  2:537646/1‑220 (MQ=255)                                                                                                                                                                                                      cGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCAcc                                                                            <  1:120472/178‑1 (MQ=255)                                                                                                                                                                                                         tCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCAACGTCAAGGa               <  1:462038/236‑1 (MQ=255)                                                                                                                                                                                                                aCGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTacggca                                                <  2:500635/196‑1 (MQ=255)                                                                                                                                                                                                                 cGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCAACGTCAAGGAAGcggt         <  2:370666/234‑1 (MQ=255)                                                                                                                                                                                                                  gggTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTa                                   >  2:106900/1‑207 (MQ=255)                                                                                                                                                                                                                       ccGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCAACGTCAAGGAAGCGGTCGGTGAc  >  1:428248/1‑235 (MQ=255)                                                                                                                                                                                                                       ccGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCAACGTCAAGGAAGCGGTCGGTGAc  >  1:587427/1‑235 (MQ=255)                                                                                                                                                                                                                        cgcgCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACgctg                                                                                      >  2:12260/1‑150 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                                         GCCCTTGCTGGCGTCGTATTTGTTGGCCACTTCCAGCAGGCCGATCATGCCGGCCTGGATCAGGTCCTCGACCTGCACGTTGGCCGGCAAGCGCGCCAACAGGTGGTAGGCGATGCGCTTGACCAGCGGGGCGTAGCGTTCGATCAGCTCGTACTGGGCGTCCTTCGCCGCCCGGCTGTACATCTTGAAGCCGCTGGCGTTCATAGTACGGGTCCCGCGCTGGTGGGTTGCACCAAGCGCTCGACAAAGAACTCCAGATGGCCGCGCGGATTGGCTGGCAGCGGCCAGCTGTCAACCTTCTGGGCAATCGCCTTGAAGGCCAGCGCGCACTTGGAGCGAGGGAAGGCTTCGTAGACGGCACGCTGCTTCTGCACCGCCTTGCGCACGCACTCGTCGTACGGCACGGCACCCACGTACTGCAGGGCAACGTCAAGGAAGCGGTCGGTGAC  >  AE015451/4932014‑4932462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.