New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	685602 =	31 (0.760)	3 (0.080)	3/328	NT	9.1%	coding (645/2400 nt)	cadA‑II	cadmium translocating P‑type ATPase
	?	AE015451	685617 =	30 (0.750)					coding (630/2400 nt)	cadA‑II	cadmium translocating P‑type ATPase

GCGCAGGGCTTCGAGGGCTCGGATGGCACTGGCGGTCTGGCGTTTGGCGCGGCTTTCCAGGTACTTGCCCAGCAATACCAGGGCAATCACCACGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGCGGCAGGGCCAACAGCAAGGCTGCACCGACTGCCAGGCGCTCGTTGCGCAGGCGGCGCTGGA  >  AE015451/685389‑685804                                                                                                                                                                                                                                     |                                                                                                                                                                                            gcgcAGGGCTTCGAGGGCTCGGATGGCACTGGCGGTCTGGCGTTTGGCGCGGCTTTCCAGGTACTTGCCCAGCAATACCAGGGCAATCACCACGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAgg                                                                                                                                                                                      <  1:236452/236‑1 (MQ=255)   gcAGGGCTTCGAGGGCTCGGATGGCACTGGCGGTCTGGCGTTTGGCGCGGCTTTCCAGGTACTTGCCCAGCAATACCAGGGCAATCACCACGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGc                                                                                                                                                                                     >  1:359894/1‑235 (MQ=255)       ggCTTCGAGGGCTCGGATGGCACTGGCGGTCTGGCGTTTGGCGCGGCTTTCCAGGTACTTGCCCAGCAATACCAGGGCAATCACCACGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAgg                                                                                                                                                                                      <  2:359893/230‑1 (MQ=255)        gCTTCGAGGGCTCGGATGGCACTGGCGGTCTGGCGTTTGGCGCGGCTTTCCAGGTACTTGCCCAGCAATACCAGGGCAATCACCACGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAgg                                                                                                                                                                                      <  1:84198/229‑1 (MQ=255)                                                                   gCCCAGCAATACCAGGGCAATCACCACGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCggg                                                                                                                                                                    <  1:210506/188‑1 (MQ=255)                                                                                    cAATCACCACGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAg                                                                                                                                                                           >  2:535736/1‑164 (MQ=255)                                                                                        ctggtattacccatgctggtacacccgttcggcttgcactggatgctacccgcctgggcgccgttcctgctggccacacccgtgcagttcattctcggtgcccgcttctacattgcagcctggaagGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCgaga                                                                                                                                                            >  1:512989‑M1/127‑175 (MQ=255)                                                                                        caccacGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAg                                                                                                <  1:420066/235‑1 (MQ=255)                                                                                                       agacaggTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTAcc                                                                                 <  1:631365/229‑1 (MQ=255)                                                                                                        tggtacaaccgttcggcttgcactggatgctacccgcctgggcgcagttcctgctggccacacccgtgcagttcattctcggtgcccgcttctacattgcagcctggaaggccgtgcgcgccggcCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGtgtg                                                                                                                                          >  2:595787‑M2/126‑177 (MQ=255)                                                                                                        tggtacaaccgttcggcttgcactggatgctacccgcctgggcgcagttcctgctggccacacccgtgcagttcattctcggtgcccgcttctacattgcagcctggaaggccgtgcgcgccggcCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGtgtg                                                                                                                                          <  1:595788‑M2/52‑1 (MQ=255)                                                                                                                      cGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCa                                                                                                       >  1:24480/1‑198 (MQ=255)                                                                                                                          gCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGAGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGcc                                                                                                                        <  1:234905/177‑1 (MQ=255)                                                                                                                           ccATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACt                                                                                                                                                     >  2:631364/1‑147 (MQ=255)                                                                                                                              tGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGACCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGCGGCa                                                           <  1:405327/234‑1 (MQ=255)                                                                                                                                                        tACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAgg                                                                                                                                                                                      <  2:239535/85‑1 (MQ=255)                                                                                                                                                        tACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAgg                                                                                                                                                                                      >  1:239536/1‑85 (MQ=255)                                                                                                                                                                cAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGACCt                                                                                                                                                     >  2:5195/1‑110 (MQ=255)                                                                                                                                                                  cacacccgtgcagttcattctcggtgcccgcttctacattgcagcctggaagGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCa                                                                                <  1:595788‑M1/125‑1 (MQ=255)                                                                                                                                                                  cacacccgtgcagttcattctcggtgcccgcttctacattgcagcctggaagGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCa                                                                                >  2:595787‑M1/53‑177 (MQ=255)                                                                                                                                                                    ccctAACCCGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGc                                                               <  2:245802/189‑1 (MQ=255)                                                                                                                                                                     cATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAgg                                                                                                                                                                                      <  2:399625/72‑1 (MQ=255)                                                                                                                                                                     cATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAgg                                                                                                                                                                                      >  1:399626/1‑72 (MQ=255)                                                                                                                                                                     cATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTCCCAGGCTGCAATGTAGAAGCGGGCACCGGGAATGAACTGCCCGGGTGTGGCCAGCAGGAAc                                                                                                                              >  2:227075/1‑128 (MQ=255)                                                                                                                                                                          ccAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCACACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGCGGCAg                                                          >  2:311662/1‑191 (MQ=255)                                                                                                                                                                                cTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGGAGCATCCAGGGCAAGc                                                                                               >  1:171685/1‑148 (MQ=255)                                                                                                                                                                                   gTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGcc                                                                                              <  2:406164/146‑1 (MQ=255)                                                                                                                                                                                   gTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGcc                                                                                              >  1:406165/1‑146 (MQ=255)                                                                                                                                                                                    tctcggtgcccgcttctacattgcagcctggaaggccgtgcgcgccggcCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACGGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGGTGTACCAGCATGGGTAATACCAg                                                                >  1:512989‑M2/50‑175 (MQ=255)                                                                                                                                                                                      cccAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGCGGCAGGGCCAACAGCAAGGCTGCACCGACt                                 >  1:79692/1‑204 (MQ=255)                                                                                                                                                                                        caggctcaccaGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTAcc                                                                                 <  1:238179/148‑1 (MQ=255)                                                                                                                                                                                                        tCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGCGGCAGGGCCAACAGc                                                >  1:144445/1‑171 (MQ=255)                                                                                                                                                                                                          cATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGGAGCAGCCAgg                                                                                                     >  2:215405/1‑115 (MQ=255)                                                                                                                                                                                                           aTGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCgg                                                                                                                 <  2:215746/103‑1 (MQ=255)                                                                                                                                                                                                               tGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGCACGGTTGTACCAGCCTggg                                                                         >  2:692889/1‑139 (MQ=255)                                                                                                                                                                                                                    gcgccggcgcGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTAcc                                                                                 <  1:377673/126‑1 (MQ=255)                                                                                                                                                                                                                      GCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGCGGCAGGGCCAACAGCAAGGCTGCACCGACTGCCAGGCGCTCGTTGCGCAGGCGGCGCTGGa  <  2:323604‑M1/203‑1 (MQ=255)                                                                                                                                                                                                                      GCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGCGGCAGGGCCAACAGCAAGGCTGCACCGACTGCCAGGCGCTCGTTGCGCAGGCGGCGCTGGa  >  1:323605‑M1/1‑203 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                            GCGCAGGGCTTCGAGGGCTCGGATGGCACTGGCGGTCTGGCGTTTGGCGCGGCTTTCCAGGTACTTGCCCAGCAATACCAGGGCAATCACCACGGCTGAGGCTTCGAAGTACAGGTGCGGGGCCATGCCGGCGGGAGCCTGTGCCCATTGGTACAGGCTCAGGCCATAACCAGCGCTGGTGCCCAGGGCCACCAGCAGGTCCATGTTGCCGGCGCCGGCGCGCACGGCCTTCCAGGCTGCAATGTAGAAGCGGGCACCGAGAATGAACTGCACGGGTGTGGCCAGCAGGAACTGCGCCCAGGCGGGTAGCATCCAGTGCAAGCCGAACGGTTGTACCAGCATGGGTAATACCAGCGGCAGGGCCAACAGCAAGGCTGCACCGACTGCCAGGCGCTCGTTGCGCAGGCGGCGCTGGA  >  AE015451/685389‑685804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.