New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360180 =	6 (0.570)	10 (1.730) +CCCTAGACCTAGGGCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACG	9/152	NT	85.9%	intergenic (‑114/+481)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	1308956 =	0 (0.000)					intergenic (+41/+19)	ompW/yciE	outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein

CAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACG  >  CP009273/360040‑360325                                                                                                                                             |                                                                                                                                                  aaacaactgagaaatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGAttt                                                                                                                                          <  1:194895‑M1/10‑1 (MQ=255)             aatttttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAg                                                                                                                               <  1:86524‑M1/21‑1 (MQ=255)                  ttaattcgctctgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGagag                                                                                                                          >  2:194895‑M1/124‑149 (MQ=255)                   cagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGGGTCCTGCCCCCCCCCCCCCCGGCCGTTGGTTCTCAACGTTCAAAACCCCTCCCCGCGGGGTTTTCCTTCTCAGGAGAGCg                                                                                                                        <  2:31220‑M1/104‑1 (MQ=255)                    agtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt                                                                                                                       >  1:176990‑M1/46‑150 (MQ=255)                    agtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt                                                                                                                       >  2:17258‑M1/46‑150 (MQ=255)                            gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGac                                                                                                               >  2:159528‑M1/38‑150 (MQ=255)                             tgaaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGac                                                                                                               <  2:97900‑M1/37‑1 (MQ=255)                               aaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa                                                                                                            <  1:50136‑M1/40‑1 (MQ=255)                               aaactgatggcgtagaagcgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa                                                                                                            <  2:160523‑M1/40‑1 (MQ=255)                                    ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAacaaca                                                                                                       >  1:41742‑M1/30‑150 (MQ=255)                                         gttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa                                                                                                  >  2:46893‑M1/25‑150 (MQ=255)                                                 cgaagaaataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg                                                                                          >  1:18517‑M1/93‑150 (MQ=255)                                                   atgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg                                                                                         >  2:142747‑M1/15‑149 (MQ=255)                                                      cctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc                                                                                      >  1:31220‑M1/12‑149 (MQ=255)                                                       aataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAg                                                                                    <  1:125557‑M1/64‑1 (MQ=255)                                                        ataataccctttataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt                                                                                   >  1:174786‑M1/86‑150 (MQ=255)                                                               ccAATTCCTGGCAGTTTATGGCGGGCGTCCCTCCCCCCACCCCCCCGGCCGTTGCTTCGCAACGTTCAAAACCGCCCCCCGCGGGTTTTTCCTACTCAGGAGAGCGGTCACCCACAAACAACAGATAAAAACAAAAGCCCCGTCTTTTGa                                                                            >  1:17258/1‑150 (MQ=11)                                                                taaTTCCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCGGCCGGTGGTTTGCAACGTTCCAATCCGCTCCCCGCGGGGTTGTCCTCCCCAGGAGAGCGGTCACCCACAAAAAAAAAAAAAAAAGAAAAGCCCCGACtttttac                                                                           >  2:101974/2‑146 (MQ=255)                                                                   tataccatgtcccgtattaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt                                                                          <  2:62971‑M1/74‑1 (MQ=255)                                                                                  attaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAtt                                                         <  1:101640‑M1/91‑1 (MQ=255)                                                                                   ttaccgcctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt                                                        >  1:160523‑M1/59‑150 (MQ=255)                                                                                          ctttgagtgagctgataccgctcgccgcagccgaacgccctaggtctagggCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCt                                                 >  1:97900‑M1/52‑150 (MQ=255)                                                                                               cccGCCTCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg                                              <  1:9633/148‑1 (MQ=11)                                                                                                  gCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat                                          >  2:123501/1‑149 (MQ=33)                                                                                                                        cGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACg                    <  1:22005/149‑1 (MQ=255)                                                                                                                        cGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACg                    >  2:22721/1‑149 (MQ=255)                                                                                                                                         cTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACg  >  2:11125/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                                  CAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACG  >  CP009273/360040‑360325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.