New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360180 =	6 (0.570)	10 (1.730) +CCCTAGACCTAGGGCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACG	9/152	NT	85.9%	intergenic (‑114/+481)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	1308956 =	0 (0.000)					intergenic (+41/+19)	ompW/yciE	outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein

ACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAATATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCG  >  CP009273/1308820‑1309092                                                                                                                                         |                                                                                                                                         agtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGtata                                                                                                                               <  2:62971‑M2/12‑1 (MQ=255)          actgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGtattat                                                                                                                    >  1:174786‑M2/128‑150 (MQ=255)           ctgggcctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTattatt                                                                                                                   <  1:125557‑M2/24‑1 (MQ=255)                 ctttcgttttatctgttgtttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCg                                                                                                             >  1:18517‑M2/121‑150 (MQ=255)                                   tttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGttt                                                                                           <  1:50136‑M2/48‑1 (MQ=255)                                   tttgtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGttt                                                                                           <  2:160523‑M2/48‑1 (MQ=255)                                      gtcggtgaacgctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCa                                                                                         <  2:97900‑M2/50‑1 (MQ=255)                                                 ctctcctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTaa                                                                              >  2:194895‑M2/89‑149 (MQ=255)                                                      ctgagtaggacaaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAAtt                                                                         <  1:86524‑M2/66‑1 (MQ=255)                                                                 aaatccgccgccctagacctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGttt                                                             <  1:194895‑M2/78‑1 (MQ=255)                                                                                                ctgcggcgagcggtatcagctcactcaaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGCTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCAt                              <  2:50957‑M2/109‑1 (MQ=255)                                                                                                                          aaaggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCt     <  2:18517‑M2/134‑1 (MQ=255)                                                                                                                            aggcggtaatacgGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCg  <  1:23898‑M2/137‑1 (MQ=255)                                                                                                                                         |                                                                                                                                         ACCACCGCCAATTATAAGCTGGGCGGTGCACAGCAACACGATAGCGTACGCCTCGATCCGTGGGTGTTTATGTTCTCAGCAGGATATCGTTTTTAATTCCGCACAAAAACGACCCCGTAATATACGGGGTCAATAAGGACATGGTATAAAGGGTATTATTTCTTCGCTTCTACGCCATCAGTTTCAGAGCGAATTAAAAATTTCTCAGTTGTTTGCGGAATATTCTGAATCAGCCAGTCGGCCATTTGCTTTTCCTCATTTAAAATCGCTTCG  >  CP009273/1308820‑1309092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.