Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC | CP009273 | 374,639 | +GCCC | 100% | coding (389/1110 nt) | frmA ← | alcohol dehydrogenase class III/glutathione‑dependent formaldehyde dehydrogenase |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 374639 | 0 (0.000) | 6 (0.590) +GCCC |
8/258 | NT | 100% | coding (389/1110 nt) | frmA | alcohol dehydrogenase class III/glutathione‑dependent formaldehyde dehydrogenase |
? | CP009273 | 374640 = | 0 (0.000) | coding (388/1110 nt) | frmA | alcohol dehydrogenase class III/glutathione‑dependent formaldehyde dehydrogenase |
ACGTGTTCATGGTTTGCTTCTGGATTAATTTTTGCCAGAGACACTTCCGCGACTACGGTGTATTCACTGAATGTAGAGCACCCCATGTAGTGATAAAGCGGCTGCCCGTTGTAAGAAAAACGGGTGGTGCCGTCTGGCATCAGGCCTTTACCCTGGGTTTCGCGAACCGCAACACAGAGGTTAGTTTTGCCAGAACGACAGAACTCACACTCGCCGCACTCCGCGGTGTAAAGCGGGATCACATGGT > CP009273/374537‑374783 | aCGTGTTCATGGTTTGCTTCTGGATTAATTTTTGCCAGAGACACTTCCGCGACTACGGTGTATTCACTGAATGTAGAGCACCCCATGTAGTGATAAAGCGGCTgcccgcccgttgtaagaaaaacgggtggtgccgtctggcatcaggcc < 1:155260‑M1/150‑48 (MQ=255) tGCTTCTGGATTAATTTTTTCCAGAGACACTTCCGCGACTACGGTGTATTCACTGAATGTAGAGCACCCCATGTCGTGATAAAGCGGCTgcccgcccgttgtaagaaaaacgggtggtgccgtctggcatcaggcctttaccctgggttt > 1:87943‑M1/1‑89 (MQ=255) aCTACGGTGTATTCACTGAATGTAGAGCACCCCATGTAGTGATAAAGCGGCTgcccgcccgttgtaagaaaaacgggtggtgccgtctggcatcaggcctttaccctgggtttcgcgaaccgcaacacagaggttagttttgccagaacg < 2:87943‑M1/150‑99 (MQ=255) cGGTGTATTCACTGAATGTAGAGCACCCCATGTAGTGATAAAGCGGCTgcccgcccgttgtaagaaaaacgggtggtgccgtctggcatcaggcctttaccctgggtttcgcgaaccgcaacacagaggttagttttgccagaacgaca < 2:33510‑M1/149‑102 (MQ=255) ttCACTGAATGTAGAGCACCCCATGTAGTGATAAAGCGGCTgcccgcccgttgtaagaaaaacgggtggtgccgtctggcatcaggcctttaccctgggtttcgcgaaccgcaacacagaggttagttttgccagaacgacagaactca < 2:174050‑M1/149‑109 (MQ=255) aaTGTAGAGCACCCCATGTAGTGATAAAGCGGCTgcccgcccgttgtaagaaaaacgggtggtgccgtctggcatcaggcctttaccctgggtttcgcgaaccgcaacacagaggttagttttgccagaacgacagaactcacactcg < 2:192924‑M1/148‑115 (MQ=255) aaGCGGCTgcccgcccgttgtaagaaaaacgggtggtgccgtctggcatcaggcctttaccctgggtttcgcgaaccgcaacacagaggttagttttgccagaacgacagaactcacactcgccgcactccgcggtgtaaagcgggatca > 2:23485‑M1/1‑8 (MQ=255) gCGGCTgcccgcccgttgtaagaaaaacgggtggtgccgtctggcatcaggcctttaccctgggtttcgcgaaccgcaacacagaggttagttttgccagaacgacagaactcacactcgccgcactccgcggtgtaaagcgggatcaca > 1:81914‑M1/1‑6 (MQ=255) | ACGTGTTCATGGTTTGCTTCTGGATTAATTTTTGCCAGAGACACTTCCGCGACTACGGTGTATTCACTGAATGTAGAGCACCCCATGTAGTGATAAAGCGGCTGCCCGTTGTAAGAAAAACGGGTGGTGCCGTCTGGCATCAGGCCTTTACCCTGGGTTTCGCGAACCGCAACACAGAGGTTAGTTTTGCCAGAACGACAGAACTCACACTCGCCGCACTCCGCGGTGTAAAGCGGGATCACATGGT > CP009273/374537‑374783 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |