New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	607566 =	100 (0.770)	25 (0.210) +CGCTCCGGT	10/254	4.8	22.3%	coding (409/1125 nt)	EO946_RS03185	collagen‑like protein
	?	NZ_CP034943	= 607637	87 (0.670)					coding (480/1125 nt)	EO946_RS03185	collagen‑like protein
Rejected: Coverage evenness skew score above cutoff.

GTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/607635‑607566 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGTCGCT  <  NZ_CP034943/607637‑607517                                                                       |||||||||                                                                                                                          GTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCT                                                              <  1:1216765/140‑1  TCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTG                                                             <  2:1721505/140‑1      GCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGC                                                         <  2:316549/140‑1          CCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCC                                                     <  2:1704766/140‑1                TAGCTCCTGTCGCTCCGCCAGGTCCGACGTAGCCAGTAGCCCCGGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCt                                               <  2:364812/140‑2                   CTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCG                                            >  1:992984/1‑140                    TCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                                           <  2:550290/140‑1                    TCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                                           <  2:1232755/140‑1                    TCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGG                                           <  2:1614292/140‑1                                               CCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG                >  1:495702/1‑140                                                CCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGT               <  1:756201/140‑1                                                CCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGACGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGT               <  1:1953794/140‑1                                                    TAGCCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGTCGTCCCCAGTAGCCCCTGTGGCTCCCGTCGCTCCGGGTTGTCCGGCGTCCCCGGTAGCTCCTGTCGCT           >  1:890246/1‑140                                                       CCCCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCT                                                                                            >  2:1534626/1‑56                                                       CCCCGGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCT                                                                                            <  1:1534626/56‑1                                                         CCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCgt                                                                            >  1:534745/1‑68                                                         CCTGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTT                                                                            <  2:534745/70‑1                                                           TGTGGCTCCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGCTGGTCCGGCTTCCCCAGTAGCGCCTGTGGCTCCCGTGGCGCCGGCTGGTCCGGCTTCTCCGGTAGCTCCTGTCGCTCCCGggg    >  1:1605984/1‑137                                                             taGCTCCCGCCGCTCCGGGTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGCTCCGGCTTCGCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGTCGCT  <  2:148926/138‑1                                                                  CCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGC                                                                  >  1:627759/1‑71                                                                  CCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGC                                                                  <  2:627759/71‑1                                                                  CCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCG                                                                                >  2:1626031/1‑57                                                                  CCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCCGTCGCTCCGGC                                                                                       >  2:1444189/1‑50                                                                  CCCGTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCT                                                                                                     >  2:457620/1‑36                                                                     GTCGCTCCGGTTGGTCCGGCTTCCCCGGTAGCTCCTG                                                                                                 >  2:1783699/1‑37                                                                       |||||||||                                                                                                                          GTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/607635‑607566 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCGGCTGGTCCGGCTTCCCCAGTAGCCCCTGTGGCTCCCGTGGCCCCGGCTGGTCCGGCTTCCCCGGTAGCTCCTGTCGCTCCCGTCGCT  <  NZ_CP034943/607637‑607517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.