New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 322107	260 (1.010)	2 (0.010) +AAG	3/242	NT	0.77%	pseudogene (55/570 nt)	EO946_RS01795	hypothetical protein
	?	NZ_CP034943	322108 =	261 (1.000)					pseudogene (56/570 nt)	EO946_RS01795	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

TTTTCATTTATTCGTTGCAGAAGCGCAGGCTGTTATTGTAACATGTAAGCCATAAGCCATTCGTAAAAGTGCGGGAGGAAGGTCATGAATAATCTGCATAACAGACTTTCAGGCGTGAATGGGAAAAATAAGAGAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/321969‑322107 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAGAACAAAAAATCTGGTCGGAGATTGGGATGATAGCGGGAGCGTTTACGTTGCTTGATGTGATTGTCCGCGGCATTATGTTTGAATTTCCGTTTAAAGAATGGGCTGCAAGCCTTGTGTTTTTGTT  >  NZ_CP034943/322108‑322237                                                                                                                                            |||                                                                                                                                   TTTTCATTTATTCGTTGCAGAAGCGCAGGCTGTTATTGTAACATGTAAGCCATAAGCCAGTCGTAAAAGTGCGGGAGGAAGGTCATGAATAATCTGCATAACAGACTTTCAGGCGTGAATGGGACAAATAAGAGAGTAAA                                                                                                                                      >  1:2878618/1‑140                                       TAACATGTAAGCCATAAGCCATTCGTAAAAGTGCGGGAGGAAGGTCATGAATAATCTGCGTAATAGACTTTCAGGCGTGAATGGGAAAAATAAGAGAGTAAAAGAAAAAGAACAAAAAATCTGGTCGGAGATTGGGATGA                                                                                                >  1:944340/1‑140                                                                                     ATGAATAATCTGCGTAATAGACTTTCAGGCGTGAATGGGAAAAATAAGAGAGTAAAAGAAAAAGAACAAAAAATCTGGTCGGAGATTGGGATGATAGCGGGAGCATTTGCGCTGCTTGATGTGATCATCCGCGGCATTAT                                                  >  1:1044445/1‑140                                                                                                                                     AGAGTAAAAGAAAAAGAACAAAAAATCTGGTCGGAGATTGGGATGATAGCGGGAGCATTTGCGCTGCTTGATGTGATCATCCGCGGCATTATGTTTGAATTTCCGTTTAAAGAATGGGCTGCAAGCCTTGTGTTTTTGTT  <  2:1044445/140‑1                                                                                                                                            |||                                                                                                                                   TTTTCATTTATTCGTTGCAGAAGCGCAGGCTGTTATTGTAACATGTAAGCCATAAGCCATTCGTAAAAGTGCGGGAGGAAGGTCATGAATAATCTGCATAACAGACTTTCAGGCGTGAATGGGAAAAATAAGAGAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/321969‑322107 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAGAACAAAAAATCTGGTCGGAGATTGGGATGATAGCGGGAGCGTTTACGTTGCTTGATGTGATTGTCCGCGGCATTATGTTTGAATTTCCGTTTAAAGAATGGGCTGCAAGCCTTGTGTTTTTGTT  >  NZ_CP034943/322108‑322237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.