| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 1222275 = | 266 (1.820) | 3 (0.020) | 3/242 | NT | 1.2% | coding (52/159 nt) | yjcZ | sporulation protein YjcZ |
| ? | NZ_CP034943 | = 1222271 | 255 (1.820) | coding (48/159 nt) | yjcZ | sporulation protein YjcZ | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/1222416‑1222275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATACACTATGTGTGCAGCCTTAATCGGCTTGGATATTCGCATAGGGCGTTTGCGGATTTATGATTGT < NZ_CP034943/1222271‑1222133 TACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCG > 1:1091685/1‑140TACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCG > 1:1809402/1‑140TACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCG > 1:972876/1‑140TACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAAACATAGCCGCCGCCGTAACCGCCAGCATAACCG > 1:885677/1‑140 agagtACATCACCCGTACTTACCTAAATAAACCTTAGAAGTTATACAAAGAAGCACCCACGATGATAAGGAGAATGAACAATACTACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGC < 2:1365544/135‑1 ACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGC < 2:2234866/140‑1 ACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGC < 2:2158706/140‑1 ACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGC < 2:1265265/140‑1 ACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGC < 2:1265131/140‑1 ACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGC < 2:1228383/140‑1 ACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCAGAGCCGCCGCCGTAACCGCCAGCATAACCGC < 2:1154460/140‑1 CAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCC > 1:83196/1‑140 CAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCC > 1:784134/1‑140 CAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCC > 2:1587783/1‑140 CAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCC > 2:601557/1‑140 atAATACGACCAACAAAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCCATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATAC < 2:1715649/138‑1 AACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCCATAACAGCCGCCGCCGTAGCCGCCGCCGAATCCGTATCCAAAGCCCAT > 1:680070/1‑85 AACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCCATAACAGCCGCCGCCGTAGCCGCCGCCGAATCCGTATCCAAAGCCCAT < 2:680070/85‑1 CGCCATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATACACTATGTGTGCAGCCTTAATCGGCTTGGATATTCGCATAGGGCGTTTGCGGATTTATGAT < 2:2171383/140‑1 CATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATACACTATGTGTGCAGCCTTAATCGGCTTGGATATTCGCATAGGGCGTTTGCGGATTTATGATTGT < 1:99621/140‑1 CATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATACACTATGTGTGCAGCCTTAATCGGCTTGGATATTCGCATAGGGCGTTTGCGGATTTATGATTGT < 1:102878/140‑1 CATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATACACTATGTGTGCAGCCTTAATCGGCTTGGATATTCGCATAGGGCGTTTGCGGATTTATGATTGT < 1:1605084/140‑1 CATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATACACTATGTGTGCAGCCTTAATCGGCTTGGATATTCGCATAGGGCGTTTGCGGATTTATGATTGT < 1:1464300/140‑1 CATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATACACTATGTGTGCAGCCTTAATCGGCTTGGATATTCGCATAGGGCGTTTGCGGATTTATGATTGT < 1:1177308/140‑1 TACAGGACATCACCCGTACTTCCCTCAATAAACCTTAGAAGTTATAAAAAGATGCACCCACGATGATAAGGAGAATGAACAATACGACTAAAAGAACAAATGTTGAACCATAGCCGCCGCCGTAACCGCCAGCATAACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/1222416‑1222275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccATAACAGCCGCCGCCGTAGCCGCCTCCGAATCCGTATCCAAAGCCCATAGTTAAGCACCTCCTTTACTCTCTATACACTATGTGTGCAGCCTTAATCGGCTTGGATATTCGCATAGGGCGTTTGCGGATTTATGATTGT < NZ_CP034943/1222271‑1222133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |