New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 3777195	364 (1.160)	5 (0.020) +AAGACCGCATGAAACGAGCGGTCTTT	3/200	NT	2.1%	intergenic (‑111/+129)	ywaC/EO946_RS19460	GTP pyrophosphokinase YwaC/DUF2199 domain‑containing protein
	?	NZ_CP034943	3778186 =	237 (0.760)					intergenic (‑350/+4)	EO946_RS19460/EO946_RS19465	DUF2199 domain‑containing protein/1,4‑dihydroxy‑2‑naphthoate polyprenyltransferase
Rejected: Frequency below/above cutoff threshold.

GTTCGTCATCTCCTTTAACGGATCTTTATCCGCTGTCCATGTACTAGACGTGCCTGCCTGCAGCATGGTTTTATGAACTTTTTTACAAAATGCGGTCGAATGTAACAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3777085‑3777195 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTATCGGAAATAGCTGATCAATAATCCGATTGAGAGCAGGAATCCGAAAAATGTATTTGTTTGGG  >  NZ_CP034943/3778186‑3778254                                                                                                                ||||||||||||||||||||||||||                                                                      GTTCGTCATCTCCTTTAACGGAACTTTATCCGCTGTCCATGTACTAGACGTCCCTGTCTGCTGCAAGGTTCTATGAATTTTTTTACAAAATGCGGTCGATTGTAACAAAAAAAGACCGCATGAAACGAGCGGTCTTATTT                                                                    >  1:3631825/1‑140                                                    cCCTGTCTGCTGCAAGGTTCTATGAATTTTTTTACAAAATGCGGTCGATTGTAACAAAAAAAGACCGCATGAAACGAGCGGTCTTTTTTATTATCGGAAATAGCTGATCAATAATCCGATCGAGAGCAGGAATCCGAAAA                 >  1:928341/2‑140                                                    cCCTGTCTGCTGCAAGGTTCTATGAATTTTTTTACAAAATGCGGTCGATTGTAACAAAAAAAGACCGCATGAAACGAGCGGTCTTTTTTATTATCGGAAAT                                                        >  1:1421213/2‑101                                                    cCCTGTCTGCTGCAAGGTTCTATGAATTTTTTTACAAAATGCGGTCGATTGTAACAAAAAAAGACCGCATGAAACGAGCGGTCTTTTTTATTATCGGAAAT                                                        <  2:1421213/100‑1                                                              tGCAAGGTTCTATGAATTTTTTTACAAAATGCGGTCGATTGTAACAAAAAAAGACCGCATGAAACGAGCGGTCTTTTTTATTATCGGAAATAGCTGATCAATAATCCGATCGAGAGCAGGAATCCGAAAAATGTATTTGT       <  2:928341/139‑1                                                                   GGTTCTATGAATTTTTTTACAAAATGCGGTCGAGTGTAACAAAAAAAGACCGCATGAAACGAGCGGTCTTTTTTATTATCGGAAATAGCTGATCAATAATCCGATCGAGAGCAGGAATCCGAAAAATGTATTTGTTTGGG  <  1:3469275/140‑1                                                                                                                ||||||||||||||||||||||||||                                                                      GTTCGTCATCTCCTTTAACGGATCTTTATCCGCTGTCCATGTACTAGACGTGCCTGCCTGCAGCATGGTTTTATGAACTTTTTTACAAAATGCGGTCGAATGTAACAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3777085‑3777195 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTATCGGAAATAGCTGATCAATAATCCGATTGAGAGCAGGAATCCGAAAAATGTATTTGTTTGGG  >  NZ_CP034943/3778186‑3778254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.