| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 3592725 = | 198 (0.770) | 7 (0.030) | 4/232 | NT | 3.7% | coding (424/702 nt) | urtE | urea ABC transporter ATP‑binding subunit UrtE |
| ? | NZ_CP034943 | = 3592721 | 185 (0.780) | coding (428/702 nt) | urtE | urea ABC transporter ATP‑binding subunit UrtE | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/3592873‑3592725‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT < NZ_CP034943/3592721‑3592586 CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCTAAGGCGGCGATTTAAGCGGAGGCC < 2:453071/140‑1CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC < 2:2689296/140‑1CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACACTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC < 1:1029176/140‑1CGTTCGTGACAACATGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCC < 2:3018586/140‑1 TTCGTGACAACCTGCTGCTTGGAGACGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 1:1160287/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCCAGGAAGACATTTTTCAGTGGTTTGCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGAGTTAAGCGGAGGCCAG > 2:2614795/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGTGGCCAG > 2:3361535/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 1:1985403/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 1:1986721/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 2:3315020/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 2:2767409/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 2:2643746/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 2:252147/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 1:3701727/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 2:1630515/1‑140 TTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAG > 2:1483331/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGGGGCGATTTAAGCGGAGGCCAGCA > 2:2478458/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA > 2:3581721/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA > 1:1130221/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA > 1:277302/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA > 1:3158174/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA > 1:3233522/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA > 1:3263339/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA > 1:3263347/1‑140 CGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCA > 1:3680763/1‑140 GACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCA < 2:389912/140‑1 GTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGA > 1:367474/1‑140 GTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGA > 2:1630607/1‑140 GTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGACAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGA > 1:686469/1‑140 ACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAc > 2:1685584/1‑139 ACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAA > 2:624922/1‑140 GATTTAAGCGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTC < 2:3090058/140‑1 CGGAGGCCAGCAGCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAA > 1:545788/1‑140 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG < 2:219667/140‑1 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG < 1:582817/140‑1 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG < 1:321028/140‑1 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG < 2:1468937/140‑1 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG > 1:1577256/1‑140 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG < 2:3430849/140‑1 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG < 1:159839/140‑1 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCG < 2:3624040/140‑1 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACAGTTCCG < 2:754287/140‑1 GCAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACAGTTCCG > 1:2375097/1‑140 GCAGCTAGCAAGTGCCAGAGCGCTGATGGGAAATCCGAAAATTATGTGACTTGATGAACCAATGGAAGGAATTCCGACGTCAATTATCGAACTTATCAGCCAAGTTATCGTAGTTATTTCCTGACAAAGAGACATGTCCG < 2:1119862/140‑1 CAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT < 2:3630327/140‑1 CAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT < 2:4239914/140‑1 CAGCTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT < 2:2596091/140‑1 CGTTCGTGACAACCTGCTGCTTGGAGAAGAGCCGCTTCCGAAGAAGGAGAGAATGGGGGAGGTCAAGGAAGACATTTTTCAGTGGTTTCCTGCTTTAAAAGAGATGCTTGACCGCAAAGGCGGCGATTTAAGCGGAGGCCAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/3592873‑3592725‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcTAGCAATTGCCAGAGCGCTGATGGGAAATCCGAAAATTATTTTACTTGATGAACCAATGGAAGGAATTCAGCCGTCAATTATCGAACTAATCAGACAAGTTATCGTAGAAATTTCCAGAAAAAGAGACATTTCCGT < NZ_CP034943/3592721‑3592586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |