New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	908850 =	347 (0.770)	3 (0.010)	3/242	NT	0.88%	coding (151/258 nt)	sspE	gamma type acid‑soluble spore protein SspE
	?	NZ_CP034943	= 908846	340 (0.780)					coding (147/258 nt)	sspE	gamma type acid‑soluble spore protein SspE
Rejected: Frequency below/above cutoff threshold.

TTGTTTTGTTCAGCAGATTGGTTTTGCTGTCTTACCTGCTGTACGTCAGTTTCACTAGCGAATTCAGTGCCGAATTGACCTTGTTGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/908941‑908850 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTTGA  <  NZ_CP034943/908846‑908709                                                                                                                                                                                                                                        TTGTTTTGTTCAGCAGATTGGTTTTGCTGTCTTACCTGCTGTGCGTCAGTTTCACTAGCGAATTCAGTGCCGAATTGACCTTGTTGTCCAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGC                                                                                            <  2:6393030/140‑1                                TTACCTGCTGTGCGTCAGTTTCACTAGCGAATTCAGTGCCGAATTGACCTTGTTGTCCAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCAAATTGACCTTGACCAGCA                                                             >  2:6706546/1‑140                                            CGTCAGTTTCACTAGCGAATTCAGTGCCGAATTGACCTTGTTGTCCAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTGTGTTTCGCTAGCAAATTCAGTGCCAAATTGACCTTGACCAGCAGCTGATTGTTGG                                                 >  1:2951273/1‑140                                                                                         CAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGTCGAGCAGCGGATTGTTGGTTTTGTGTTGTACCTTGTTGTGCGTTTGTTGTGCTGAAATTGTTg    >  2:4745129/1‑139                                                                                         CAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTT    >  1:3465583/1‑140                                                                                         CAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTT    >  2:2946163/1‑140                                                                                         CAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTT    >  2:3989992/1‑140                                                                                         CAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTT    >  2:4311136/1‑140                                                                                         CAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTT    >  2:4340274/1‑140                                                                                         CAGCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTT    >  2:7349174/1‑140                                                                                           GCTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTTGA  <  2:648535/140‑1                                                                                           GCTGATTGCTGGTTTTGTTGTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTTGA  <  2:3001239/140‑1                                                                                                                                                                                                                                        TTGTTTTGTTCAGCAGATTGGTTTTGCTGTCTTACCTGCTGTACGTCAGTTTCACTAGCGAATTCAGTGCCGAATTGACCTTGTTGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/908941‑908850 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcTGATTGCTGGTTTTGTTTTCTGACTTGCTGAGCGTTTGTTTCGCTAGCAAATTCAGTGCCGAATTGACCTTGACCAGCAGCTGATTGTTGGTTTTGTTTTCTAACTTGTTGTGCGTTTGTTTTGCTGAAATTGTTTGA  <  NZ_CP034943/908846‑908709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.