BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	908850 =	347 (0.770)	3 (0.010)	3/242	NT	0.88%	coding (151/258 nt)	sspE	gamma type acid‑soluble spore protein SspE
*	?	NZ_CP034943	= 908846	340 (0.780)	3 (0.010)	3/242	NT	0.88%	coding (147/258 nt)	sspE	gamma type acid‑soluble spore protein SspE
Rejected: Frequency below/above cutoff threshold.

Only 100 of 379 total aligned reads displayed.

ACTCAAACAATTTCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTAATCACTGAAACAGAAAAAAGCACTTCAT  >  NZ_CP034943/908707‑908984

aCTCAAACAATTTCAGCAATACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCa                                                                                                                                            >  2:1998918/1‑140 (MQ=255)

aCTCAAACAATTTCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCa                                                                                                                                            >  2:6141104/1‑140 (MQ=255)

  tCAAACAATTTCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAgc                                                                                                                                          <  2:648535‑M2/140‑3 (MQ=255)

    aaaCAATTTCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAgctg                                                                                                                                        >  2:7349174‑M2/1‑136 (MQ=255)

      aCAATTTCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAgctgct                                                                                                                                      >  2:388802/1‑140 (MQ=255)

        aaTTTCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTgg                                                                                                                                    <  1:7610289/140‑1 (MQ=255)

        aaTTTCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTgg                                                                                                                                    <  1:2066411/140‑1 (MQ=255)

        aaTTTCAGCAAAACAAACCCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTgg                                                                                                                                    <  2:6017344/140‑1 (MQ=255)

           ttCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCca                                                                                                                                 <  2:4501041/140‑1 (MQ=255)

                  aaccaaacGCACCACAAGGTAGCAAACAACACCACCAGTCAGCTGCTGGTCTCGGTCTATTCGGCACTGAATTTGCTAGCGAAACAAAGTCTCAGCAAGTGTGAAAAAAAAAGCAGCAATGAGCTGCTGGCCAACAAgtt                                                                                                                          <  2:5703132/137‑3 (MQ=255)

                  aaacaaacGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGt                                                                                                                          <  1:875921/140‑1 (MQ=255)

                  aaacaaacGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGt                                                                                                                          <  2:2950779/140‑1 (MQ=255)

                  aaacaaacGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGt                                                                                                                          <  1:3136153/140‑1 (MQ=255)

                  aaacaaacGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGt                                                                                                                          <  1:1388613/140‑1 (MQ=255)

                  aaacaaacGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGt                                                                                                                          <  1:5533858/140‑1 (MQ=255)

                          gCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCgg                                                                                                                  <  2:1078938/140‑1 (MQ=255)

                          gCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCgg                                                                                                                  <  2:3966216/140‑1 (MQ=255)

                            acaacaAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCACCAAGGTCAATTCGGCa                                                                                                                <  2:4399822/140‑1 (MQ=255)

                            acaacaAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCa                                                                                                                <  1:2154186/140‑1 (MQ=255)

                            acaacaAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCa                                                                                                                <  1:3816264/140‑1 (MQ=255)

                            acaacaAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCa                                                                                                                <  2:6848587/140‑1 (MQ=255)

                            acaacaAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCa                                                                                                                <  1:717099/140‑1 (MQ=255)

                            acaacaAGATACAAAACAAAACCACCAACCCGCTGAGGGACACGCACATTCCGGCACTGAATTTGCAAGCGAACCAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCa                                                                                                                <  1:6440511/140‑1 (MQ=255)

                               acaaGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTg                                                                                                             >  1:1151211/1‑140 (MQ=255)

                                 aaGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGaa                                                                                                           <  2:3606438/140‑1 (MQ=255)

                                      aGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGc                                                                                                      >  1:4417977/1‑140 (MQ=255)

                                        aaaacaaaacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTa                                                                                                    <  1:6323474/140‑1 (MQ=255)

                                        aaaacaaaacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTa                                                                                                    >  2:2695712/1‑140 (MQ=255)

                                        aaaacaaaacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTa                                                                                                    <  1:2471720/140‑1 (MQ=255)

                                          aacaaaccCACCACTCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGt                                                                                                  <  2:6345897/140‑1 (MQ=255)

                                          aacaaaacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCACGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATGCGGCACTGAATTCGCTAGt                                                                                                  >  1:6092862/1‑140 (MQ=255)

                                          aacaaaacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGt                                                                                                  >  1:2363758/1‑140 (MQ=255)

                                            caaaacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGa                                                                                                <  1:6820144/140‑1 (MQ=255)

                                              aaacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGaaa                                                                                              <  2:4118353/140‑1 (MQ=255)

                                              aaacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGaaa                                                                                              <  2:4195451/140‑1 (MQ=255)

                                               aacCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAAc                                                                                             <  2:7125652/140‑1 (MQ=255)

                                                    acaaTCCGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACg                                                                                        <  2:5804868/140‑1 (MQ=255)

                                                    acaaTCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACg                                                                                        <  1:323977/140‑1 (MQ=255)

                                                    acaaTCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACg                                                                                        <  1:7038181/140‑1 (MQ=255)

                                                    acaaTCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACg                                                                                        <  1:3679771/140‑1 (MQ=255)

                                                    acaaTCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACg                                                                                        <  1:2201999/140‑1 (MQ=255)

                                                      aaTCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAACACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTa                                                                                      <  2:4727133/140‑1 (MQ=255)

                                                       aTCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTAc                                                                                     >  2:2118663/1‑140 (MQ=255)

                                                        tCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACACAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTAca                                                                                    <  2:6286332/140‑1 (MQ=255)

                                                        tCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTAca                                                                                    <  2:1690210/140‑1 (MQ=255)

                                                        tCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTAca                                                                                    <  2:229113/140‑1 (MQ=255)

                                                        tCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTAca                                                                                    <  1:1911360/140‑1 (MQ=255)

                                                        tCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTAca                                                                                    <  2:3459280/140‑1 (MQ=255)

                                                        tCAGCTGCTGGACAATGAAAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTGAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACCAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTAca                                                                                    <  2:4448255/140‑1 (MQ=37)

                                                            ctgctgGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTAcagcag                                                                                >  2:3562854/1‑140 (MQ=255)

                                                             tgctgGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAgg                                                                               >  1:2945388/1‑140 (MQ=255)

                                                                tgGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTaa                                                                            <  2:5440734/140‑1 (MQ=255)

                                                                tgGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTaa                                                                            <  1:3562854/140‑1 (MQ=255)

                                                                 ggtcaaggtcaaTTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAg                                                                           <  2:2213568/140‑1 (MQ=255)

                                                                 ggtcaaggtcaaTTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAg                                                                           <  2:4928722/140‑1 (MQ=255)

                                                                  gtcaaggtcaaTTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGa                                                                          >  1:1481644/1‑140 (MQ=255)

                                                                      aggtcaaTTCGTCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGt                                                                                                  >  1:1081322/1‑112 (MQ=255)

                                                                       ggtcaaTTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCa                                                                     >  2:7320797/1‑140 (MQ=255)

                                                                        gtcaaTTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCaa                                                                    <  1:6235279/140‑1 (MQ=255)

                                                                            aTTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAAcc                                                                >  2:3069223/1‑140 (MQ=255)

                                                                            aTTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAAcc                                                                >  2:7718670/1‑140 (MQ=255)

                                                                             ctCGGCACTGAATTTGCTAGCGAAACACACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCa                                                               <  2:1400794/139‑1 (MQ=255)

                                                                                  cACTGAATTTGCTAGCGAACCAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCCACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctg                                                          >  2:1555636/1‑140 (MQ=255)

                                                                                  cACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctg                                                          >  1:2821797/1‑140 (MQ=255)

                                                                                  cACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctg                                                          >  1:4775527/1‑140 (MQ=255)

                                                                                  cACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctg                                                          <  2:5219110/140‑1 (MQ=255)

                                                                                  cACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctg                                                          <  1:5387915/140‑1 (MQ=255)

                                                                                  cACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctg                                                          >  1:3780254/1‑140 (MQ=255)

                                                                                  cACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctg                                                          >  1:83023/1‑140 (MQ=255)

                                                                                  cACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctg                                                          <  2:1262794/140‑1 (MQ=255)

                                                                                     tGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATctgctg                                                       >  2:4254976/1‑140 (MQ=255)

                                                                                       aaTTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAAc                                                                                             <  1:5370698/100‑1 (MQ=255)

                                                                                       aaTTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAAc                                                                                             >  2:5370698/1‑100 (MQ=255)

                                                                                              tatcGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCACCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGaacaaaaca                                              <  1:5829129/137‑1 (MQ=255)

                                                                                              tAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGaacaaaaca                                              <  1:5231646/140‑1 (MQ=255)

                                                                                              tAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGaacaaaaca                                              <  1:1208687/140‑1 (MQ=255)

                                                                                                gCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAacaaaacaaa                                            <  2:333511/140‑1 (MQ=255)

                                                                                                ccGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCGGCTGaacaaaacata                                            <  2:1330247/139‑3 (MQ=255)

                                                                                                 cGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAaaacaaac                                           <  2:6678174/140‑1 (MQ=255)

                                                                                                 cGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAaaacaaac                                           >  2:4613635/1‑140 (MQ=255)

                                                                                                 cGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAaaacaaac                                           >  1:3346148/1‑140 (MQ=255)

                                                                                                 cGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAaaacaaac                                           >  1:1678206/1‑140 (MQ=255)

                                                                                                 cGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAaaacaaac                                           >  2:7417856/1‑140 (MQ=255)

                                                                                                 cGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAaaacaaac                                           >  2:4369379/1‑140 (MQ=255)

                                                                                                      caaacGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAACcaacaa                                      <  2:3710405/140‑1 (MQ=255)

                                                                                                      caaacGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAAcaacaa                                      <  1:4133693/140‑1 (MQ=255)

                                                                                                      caaacGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAAcaacaa                                      <  1:2760555/140‑1 (MQ=255)

                                                                                                        aacGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTTAACAAAACAAACAACaaaa                                    <  1:7254801/140‑1 (MQ=255)

                                                                                                        aacGATCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACaaaa                                    <  1:4895750/140‑1 (MQ=255)

                                                                                                              cAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTa                              <  1:464992/140‑1 (MQ=255)

                                                                                                              cAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTa                              <  1:3449141/140‑1 (MQ=255)

                                                                                                              cAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGAACAGAATTCGCTAGAGAAACTGACGTACAGCAGGTAAGACAGCACAACCAATCGGCTGAACAAAACAAACAACAACACAGCTa                              <  1:3003843/140‑1 (MQ=255)

                                                                                                                gCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTAAt                            <  1:1329465/140‑1 (MQ=255)

                                                                                                                    gTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTAATCACt                        >  1:451673/1‑140 (MQ=255)

                                                                                                                               aaacCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTAATCACTGAAACAGaaaa             >  2:1604757/1‑140 (MQ=255)

                                                                                                                                     gCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTa                                                                                      <  2:2455941/61‑1 (MQ=255)

                                                                                                                                        aTCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACCACAAAACCGCTAATCACTGAAACAGAAAAAAGCACTTc    <  2:2599406/140‑1 (MQ=255)

                                                                                                                                        aTCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTAATCACTGAAACAGAAAAAAGCACTTc    >  1:2535823/1‑140 (MQ=255)

                                                                                                                                        aTCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTAATCACTGAAACAGAAAAAAGCACTTc    >  1:7378278/1‑140 (MQ=255)

                                                                                                                                          cAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTAATCACTGAAACAGAAAAAAGCACTTCAt  <  2:2718159/140‑1 (MQ=255)

ACTCAAACAATTTCAGCAAAACAAACGCACAACAAGTTAGAAAACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTCGGCACTGAATTTGCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGCTGCTGGCCAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGTACAGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAACAGCTAATCACTGAAACAGAAAAAAGCACTTCAT  >  NZ_CP034943/908707‑908984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.