New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 4010190	765 (1.650)	6 (0.010)	4/252	NT	0.78%	intergenic (‑34/‑71)	EO946_RS20605/EO946_RS20610	hypothetical protein/MFS transporter
	?	NZ_CP034943	4010195 =	755 (1.630)					intergenic (‑39/‑66)	EO946_RS20605/EO946_RS20610	hypothetical protein/MFS transporter
Rejected: Frequency below/above cutoff threshold.

TCCCCTTTGGAGTGTTCATTTTTATTACTTTCATTCTAAAGCACCGGGCTTTTCCAGTCAAATTCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/4010123‑4010190 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGTTTACGCAAAAGTACACTGTGGTATTTAAAATTTGAATGGTATTTCCATCAGGAGATCATGCTATGACAGAGGAGGTTTTCATCATGAGTCAAGAGCGCGTGAAACGGCCTGGACATACCA  >  NZ_CP034943/4010195‑4010318                                                                                                                                                                                                  TCCCCTTTGGAGTGTTCATTTTTATTACTTTCATTCTAAAGCACCGATCTGTTCCAGTCAAATTCCTGCCGTGTATATAAAAGCGCGCTGTGGTATTTAAAATTTGAATGGTTTTTCTATCAGGAGATCATGCTATGACA                                                      >  2:1276442/1‑140               TTCATTTTTATTACTTTCATTCTAAAGCACCGATCTGTTGCAGTCAAATTCCTGCCGTTTATATAAAAGCGCGCTGTGGTATTTAAAATTTGAATGGTTTTTCTATCAGGAGATCATGATATGACAGAGGAGGTTTTCAT                                        >  2:1110156/1‑140                                                  ggTTCCAGTCAAATTCCTGCCGTTTATATAAAAGCGCGCTGTGGTATTTAAAATTTGAATGGTTTTTCTATCAGGAGATCATGCTATGACAGAGGAGGTTTTCATCATGAGTCAAGAGCGCGTGAAACGGCCTGGGCATA     <  2:64593/138‑1                                                     TCCAGTCAAATTCCTGCCGTTTATATAAAAGCGCGCTGTGGTATTTAAAATTTGAATGGTTTTTCTATCAGGAGATCATGCTATGACAGAGGAGGTTTTCATCATGAGTCAAGAGCGCGTGAAACGGCCTGGGCATACCA  <  2:6151500/140‑1                                                     TCCAGTCAAATTCCTGCCGTTTATATAAAAGCGCGCTGTGGTATTTAAAATTTGAATGGTTTTTCTATCAGGAGATCATGCTATGACAGAGGAGGTTTTCATCATGAGTCAAGAGCGCGTGAAACGGCCTGGACATACCA  <  2:7235304/140‑1                                                     TCCAGTCAAATTCCAGCCGTTTATATAAAAGCGCGCTGTGGTATTTAAAATTTGAATGGTTTTTCTATCAGGAGATCATGCTATGACAGAGGAGGTTTTCATCATGAGTCAAGAGCGCGTGAAACGGCCTGGGCATACCA  <  2:3543957/140‑1                                                                                                                                                                                                  TCCCCTTTGGAGTGTTCATTTTTATTACTTTCATTCTAAAGCACCGGGCTTTTCCAGTCAAATTCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/4010123‑4010190 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGTTTACGCAAAAGTACACTGTGGTATTTAAAATTTGAATGGTATTTCCATCAGGAGATCATGCTATGACAGAGGAGGTTTTCATCATGAGTCAAGAGCGCGTGAAACGGCCTGGACATACCA  >  NZ_CP034943/4010195‑4010318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.