New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	2526375 =	283 (0.900)	3 (0.010)	3/252	NT	0.85%	intergenic (‑96/‑100)	nucB/sigK	sporulation‑specific Dnase NucB/RNA polymerase sporulation sigma factor SigK
	?	NZ_CP034943	3751590 =	415 (1.320)					coding (64/600 nt)	EO946_RS19305	DsbA family protein
Rejected: Frequency below/above cutoff threshold.

CAAAGCCGAGCGCTGCGAAAACACCTGTCACCATCGTCACCTCCACAAAAGTATGTAGGCAAAAGCCTATATGTAAATGTATGTGAGCGGGAGGCTGTCTGTGTCTGTACCGGGAAATTTCTCGTAGGAGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/2526508‑2526375 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTTTTCCAATGAAACAAAATGGGCAGACGTAATCTGAATAAACCTTGATGTGTACTGTCATGATAATCTCCTTTCGTATAAGTTGATTTTAAACTGTAACAATTAAAGTTACAAATGTTTTTTTAAAAAGAAG  >  NZ_CP034943/3751590‑3751725                                                                                                                                                                                                                                                                                CAAAGCCGAGCGCTGCGAAAACACCTGTCACCATCGTCACCTCCACAAAAGTATGTAGGCAAAAGCCTATATGTAAATGTATGTGACCGGGAGGCTGTCTGTGTCTGTACCGGGAAATTTCTCGCGGGGGAGTCCGGCTT                                                                                                                                    >  2:387571/1‑140                                                                                           GAGGCTGTCTGTGTCTGTACCGGGAAATTTCTCGCGGGGGAGTCCGGCTTTTCCAATGAAACAAAATGGGCAGACGTAATCTGAATAAACCTTGATGTGTACTGTCATGATAATCTCCTTTCGTATAAGTTG                                                  >  1:617999/1‑132                                                                                           GAGGCTGTCTGTGTCTGTACCGGGAAATTTCTCGCGGGGGAGTCCGGCTTTTCCAATGAAACAAAATGGGCAGACGTAATCTGAATAAACCTTGATGTGTACTGTCATGATAATCTCCTTTCGTATAAGTTG                                                  <  2:617999/132‑1                                                                                                                                   aaaCCGGCTGCTCCACTGAAACACAATGGGCAGACCTAATCTGAATAAACCTTGATGTGTACTGTCATGATAATCACCTGTCGTATAAGTTGATTTTCAACTGTAACAATTAAAGTTACAAATGTTTTTTTAAAAAGAAG  <  2:2917781/137‑1                                                                                                                                                                                                                                                                                CAAAGCCGAGCGCTGCGAAAACACCTGTCACCATCGTCACCTCCACAAAAGTATGTAGGCAAAAGCCTATATGTAAATGTATGTGAGCGGGAGGCTGTCTGTGTCTGTACCGGGAAATTTCTCGTAGGAGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP034943/2526508‑2526375 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTTTTCCAATGAAACAAAATGGGCAGACGTAATCTGAATAAACCTTGATGTGTACTGTCATGATAATCTCCTTTCGTATAAGTTGATTTTAAACTGTAACAATTAAAGTTACAAATGTTTTTTTAAAAAGAAG  >  NZ_CP034943/3751590‑3751725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.