| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 2838370 | 261 (0.830) | 4 (0.010) | 4/252 | NT | 1.5% | intergenic (+55/+226) | rpsD/tyrS | 30S ribosomal protein S4/tyrosine‑‑tRNA ligase |
| ? | NZ_CP034943 | 2838378 = | 256 (0.810) | intergenic (+63/+218) | rpsD/tyrS | 30S ribosomal protein S4/tyrosine‑‑tRNA ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTGAGTTCTACTCTCGTTAATCGTTTTAAAAACCCCTGCCGCTATGCGGTCGGGGTTTTTTTATCGTCTGTTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/2838295‑2838370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTCTTGCTGGCCAACACTATCTCGCGCCTGCTG > NZ_CP034943/2838378‑2838411 GTTGAGTTCTACTCTCGTTAATCGTTTTAAAAACCCCTGCCGCTATGCGGTCGGGGTTTTTTTATCGGC‑‑TTTCGCCTCTTGCTGGCCAACA < 1:2592362/91‑1GTTGAGTTCTACTCTCGTTAATCGTTTTAAAAACCCCTGCCGCTATGCGGTCGGGGTTTTTTTATCGGC‑‑TTTCGCCTCTTGCTGGCCAACA > 2:2592362/1‑91 AATCGTTTTAAAAACCCCTGCCGCTATGCGGTCGGGGTTTTTTTATCGGC‑‑TTTCGCCTCTTGCTGGCCAACACTATCTTGCGCCTGCTG < 1:4741212/89‑1 AATCGTTTTAAAAACCCCTGCCGCTATGCGGTCGGGGTTTTTTTATCGGC‑‑TTTCGCCTCTTGCTGGCCAACACTATCTTGCGCCTGCTG > 2:4741212/1‑89 GTTGAGTTCTACTCTCGTTAATCGTTTTAAAAACCCCTGCCGCTATGCGGTCGGGGTTTTTTTATCGTCTGTTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/2838295‑2838370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTCTTGCTGGCCAACACTATCTCGCGCCTGCTG > NZ_CP034943/2838378‑2838411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |