New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 3933414	341 (1.080)	4 (0.020) +GAGAGGGAGCCCCCTCTCTTTTTGTCT	4/198	NT	1.6%	coding (822/822 nt)	EO946_RS20235	SDR family oxidoreductase
	?	NZ_CP034943	3934434 =	277 (0.880)					intergenic (+1020/+1)	EO946_RS20235/EO946_RS20245	SDR family oxidoreductase/TetR/AcrR family transcriptional regulator
Rejected: Frequency below/above cutoff threshold.

GGCCTGGGAAGATGTTGATTGATGAGAAATGGAAGGAAGAAACGAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3933365‑3933414 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTATAGCAATACAACCTTATACTTCTTCACATCCAAAAACTGCAAAAACTCCCTCGCCAGCACTTCCGGCGCATGCGT  >  NZ_CP034943/3934434‑3934512                                                   |||||||||||||||||||||||||||                                                                                GGCCTGGGAAGATGCTGATTGAGGAGAAATGGAAGGAAGAAACGAAATAAGAGAGGGAGCCCCCTCTCTTTTTGTCTTTTAAAGCAATACAACCTTATATTTCTTCACATCCAAAAACTGCAAAAACTCCCTCGCCAG                    <  1:667431/138‑1 GGCCTGGGAAGATGCTGATTGAGGAGAAATGGAAGGAAGAAACGAAATAAGAGAGGGAGCCCCCTCTCTTTTTGTCTTTTAAAGCAATACAACCTTATATTTCTTCACATCCAAAAACTGCAAAAACTCCCTCGCCAG                    >  2:667431/1‑138    CTGGGAAGATGCTGATTGAGGAGAAATGGAAGGAAGAAACGAAATAAGAGAGGGAGCCCCCTCTCTTTTTGTCTTTTAAAGCAATACAACCTTATATTTCTTCACATCCAAAAACTGCAAAAACTCCCTCGCCAGCACTT               >  1:2647828/1‑140                 GATTGAGGAGAAATGGAAGGAAGAAACGAAATAAGAGAGGGAGCCCCCTCTCTTTTTGTCTTTTAAAGCAATACAACCTTATATTTCTTCACATCCAAAAACTGCAAAAACTCCCTCGCCAGCACTTCAGGCGGATGCGc  >  1:3394981/1‑139                                                   |||||||||||||||||||||||||||                                                                                GGCCTGGGAAGATGTTGATTGATGAGAAATGGAAGGAAGAAACGAAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3933365‑3933414 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTATAGCAATACAACCTTATACTTCTTCACATCCAAAAACTGCAAAAACTCCCTCGCCAGCACTTCCGGCGCATGCGT  >  NZ_CP034943/3934434‑3934512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.