BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	166199 =	518 (1.650)	3 (0.010) +A	3/244	NT	0.60%	intergenic (+4/‑168)	EO946_RS00985/EO946_RS00990	tRNA‑Ala/16S ribosomal RNA
*	?	NZ_CP034943	= 171201	499 (1.630)	3 (0.010) +A	3/244	NT	0.60%	intergenic (+18/‑167)	rrf/EO946_RS01005	5S ribosomal RNA/16S ribosomal RNA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 567 total aligned reads displayed.

CACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCGCA  >  NZ_CP034943/166061‑166337

ttgtttggtggcgatagcgaagaggtcacacccgttcccatgccgaacacggaagttaagctcttcagcgccgatggtagtcgggggtttccccctgtgagagtaggacgccgccaagcaattgcacattagtgtaattt                                                                                                                                           >  2:3717863‑M1/139‑140 (MQ=255)

ttgtttggtggcgatagcgaagaggtcacacccgttcccatgccgaacacggaagttaagctcttcagcgccgatggtagtcgggggtttccccctgtgagagtaggacgccgccaagcaattgcacattagtgtaattt                                                                                                                                           >  2:2746786‑M1/139‑140 (MQ=255)

cacaTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAtt                                                                                                                                           >  2:691240/1‑140 (MQ=33)

   aTGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAAttttt                                                                                                                                        >  2:858865/1‑140 (MQ=34)

    tGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTa                                                                                                                                       >  1:5240000/1‑140 (MQ=35)

     ggTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAACATTTTTaa                                                                                                                                      >  2:2601755/1‑140 (MQ=37)

     ggTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTaa                                                                                                                                      >  1:3293121/1‑140 (MQ=37)

     ggTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTaa                                                                                                                                      >  1:2033184/1‑140 (MQ=37)

          gggACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTaaaa                                                                                                                                    <  1:2065215/137‑1 (MQ=38)

          gggACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTaaaa                                                                                                                                    >  2:2065215/1‑137 (MQ=38)

               cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                                            >  1:1384738/1‑140 (MQ=39)

               cATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAgttgtt                                                                                                                            >  2:4763383/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCTAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:4656269/1‑140 (MQ=255)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:4410618/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:3087593/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:3023009/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:2549577/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:3213564/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:3604414/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:4453048/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  2:5172323/1‑140 (MQ=39)

                 tGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGa                                                                                                                          >  1:1126691/1‑140 (MQ=39)

                       ggCAGGTTCGCATCCTGTCTTCCCGACCATGGTAATGGGGCCTTAGCTCAGCTGGGAGAGCTCCTGCATTGAAAGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTga                                                                                                                    <  2:2857650/139‑1 (MQ=14)

                       cGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTga                                                                                                                    <  2:4320565/140‑1 (MQ=40)

                         cAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGGTGTTGACTTTgaag                                                                                                                  >  2:929440/1‑140 (MQ=255)

                            gTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGaagaag                                                                                                               <  1:3419743/140‑1 (MQ=255)

                              tcgcttCCTGTCGGACCGTCCCTTTTCTTGGGGCCTTAGCTCAGCTGGGAGAGCCCGTGCATGGCAAGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:4515445/135‑1 (MQ=14)

                              tCGGATCCTGTCTGCCCGTCCCTGTTCATGGGGCCTTAGCTCAGCTGGGAGAGCTCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:5090531/140‑1 (MQ=14)

                              tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:198954/140‑1 (MQ=255)

                              tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:484065/140‑1 (MQ=255)

                              tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:1187782/140‑1 (MQ=255)

                              tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:1419727/140‑1 (MQ=255)

                              tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:3974246/140‑1 (MQ=255)

                              tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  2:2819799/140‑1 (MQ=255)

                              tCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  1:2327121/140‑1 (MQ=255)

                              tCGAATCCTGTCTTCCCGACCATTATCATGGGGCCTTAGCTCAGCAGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  1:3347351/140‑1 (MQ=255)

                                 aaTCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCg                                                                                                          <  1:1408998/140‑1 (MQ=255)

                                      tGTCTTCCCGACAATTTTCATGGGGCCTTAGCTCAGCTGGTAGAGCGCCTGCTTTGCACGCACGAGGTCAGCGGTTCGAGCCCTCTATGCTCCTACAAAATTTTTAAAAAAGTTGTTTACTGTGAAGAAGCAGCGTTGta                                                                                                     >  1:968951/1‑140 (MQ=14)

                                      agTCTTCCCGACCAATTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                                     <  1:3899001/139‑1 (MQ=255)

                                       gTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  1:613255/131‑1 (MQ=255)

                                       gTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGtat                                                                                                    <  2:4410618/140‑1 (MQ=255)

                                       gTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGtat                                                                                                    >  1:2926660/1‑140 (MQ=255)

                                       gTCTTCCCGACCATTGTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGCGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGGTGTTGACTTTGCAGAAGCAGCGGTGtat                                                                                                    >  2:3103976/1‑140 (MQ=14)

                                        tCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGtata                                                                                                   >  1:4350431/1‑140 (MQ=255)

                                                aCCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACtcataac                                                                                           >  2:2411011/1‑139 (MQ=255)

                                                 ccATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAg                                                                                          <  2:4082717/140‑1 (MQ=255)

                                                  cATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGt                                                                                         >  2:3409990/1‑140 (MQ=255)

                                                    ttttCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTg                                                                                       >  2:4939621/1‑140 (MQ=255)

                                                            gggCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACa                                                                               <  1:3213564/140‑1 (MQ=255)

                                                               ccTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACaaat                                                                            >  2:3756672/1‑139 (MQ=255)

                                                               ccTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAg                                                                            >  2:2191047/1‑140 (MQ=255)

                                                                  tAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGa                                                                         >  1:4058944/1‑140 (MQ=255)

                                                                      tCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATaa                                                                     <  2:2244664/140‑1 (MQ=255)

                                                                        aGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAAc                                                                   >  2:3878347/1‑140 (MQ=255)

                                                                         gCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACg                                                                  >  1:1765019/1‑140 (MQ=255)

                                                                         gCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACGTTGAAGAAGCAGCGTGGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACg                                                                  >  2:1535668/1‑140 (MQ=255)

                                                                          cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGa                                                                 >  1:665825/1‑140 (MQ=255)

                                                                          cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGa                                                                 >  2:1799485/1‑140 (MQ=255)

                                                                          cTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGa                                                                 >  1:4227279/1‑140 (MQ=255)

                                                                             ggAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAAt                                                              >  2:33394/1‑140 (MQ=255)

                                                                                  gcgcCTGCTTTGCACGCAGGGGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGta                                                                                                     <  2:1644757/96‑1 (MQ=255)

                                                                                  gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCt                                                         >  2:4997256/1‑140 (MQ=255)

                                                                                  gcgcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCt                                                         >  1:3639065/1‑140 (MQ=255)

                                                                                    gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCttt                                                       >  1:3726507/1‑140 (MQ=255)

                                                                                    gcCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGGTGAATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGACATGATCttt                                                       >  2:1923581/1‑140 (MQ=255)

                                                                                     ccTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             >  1:4091370/1‑85 (MQ=255)

                                                                                         cTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGaaaa                                                  <  1:2763725/140‑1 (MQ=255)

                                                                                            tGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAagca                                                                                                             <  1:1968273/78‑1 (MQ=255)

                                                                                              cACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTaaa                                             <  2:4697114/140‑1 (MQ=255)

                                                                                              cACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTaaa                                             >  1:5050683/1‑140 (MQ=255)

                                                                                              cACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTaaa                                             >  1:3999522/1‑140 (MQ=255)

                                                                                               aCGGAGTAGTTCATCTGTTCTAGCCCGATTTGCTCAACCAATATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTTATAAAGTTGCTTTAACAAAGCTAATATACGAATTGATCTTTGAAAAATAAAc                                            <  2:348275/140‑1 (MQ=14)

                                                                                               aCGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAAc                                            <  1:1018640/140‑1 (MQ=255)

                                                                                               aCGCAGGAGGTCAGCGGTTCGAGCCCGATAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAAc                                            <  1:1282099/140‑1 (MQ=255)

                                                                                                cGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACa                                           >  2:4030510/1‑140 (MQ=255)

                                                                                                   aggaggTCAGCTGTTCGAGCGCGCTAGGCTCCACCTAATTTTTTAAAATAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        <  2:4235066/140‑1 (MQ=14)

                                                                                                   aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTga                                                                                                                    <  1:281563/64‑1 (MQ=255)

                                                                                                   aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        >  2:3358224/1‑140 (MQ=255)

                                                                                                   aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        >  1:2232572/1‑140 (MQ=255)

                                                                                                   aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        >  1:4537540/1‑140 (MQ=255)

                                                                                                   aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        >  2:2654346/1‑140 (MQ=255)

                                                                                                   aggaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGa                                        >  2:2294039/1‑140 (MQ=255)

                                                                                                     gaggTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACa                                      <  1:2174266/140‑1 (MQ=255)

                                                                                                     agtaggacgccgccaagcaattgcacattagtgtaatTTTTTAAAAAAGTTATTGACTTTGAAGAAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGGACAAACAAAATGATCTTTGAAAACTAAACAAGACa                                      <  2:540256‑M1/103‑1 (MQ=255)

                                                                                                            gCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGATTTAACAAAGCGAATAAAAGAAATGATCTTTGAAAACTAAACAAGACAAAACGTa                               <  2:2451321/140‑1 (MQ=255)

                                                                                                               gTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGTAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCt                            >  1:4868731/1‑140 (MQ=255)

                                                                                                                     gCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAAt                      <  1:16989/140‑1 (MQ=255)

                                                                                                                          cTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAtt                 >  2:4558257/1‑140 (MQ=255)

                                                                                                                          cTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAtt                 >  1:762729/1‑140 (MQ=255)

                                                                                                                          cTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAtt                 >  2:2976493/1‑140 (MQ=255)

                                                                                                                          cTAGCCTCCACCAAAATTTATAAAAAAGTTTTAGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCAtt                 >  2:3278865/1‑140 (MQ=255)

                                                                                                                               cTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTta            <  1:4733699/140‑1 (MQ=255)

                                                                                                                                 ccaccaAAATTTTTAAAAATGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGAGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTtata          <  1:1542773/140‑1 (MQ=255)

                                                                                                                                  caccaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAACTGATCTTTGAAAACTAAACCAGACAAAACGTACCTGGTCATTCATTGTTTATaa         >  2:3565215/1‑140 (MQ=14)

                                                                                                                                  caccaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATaa         >  2:2534478/1‑140 (MQ=255)

                                                                                                                                  caccaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATaa         >  1:3840343/1‑140 (MQ=255)

                                                                                                                                  caccaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCGGTTAGTTCATTTTTTATaa         >  1:2673081/1‑140 (MQ=255)

                                                                                                                                  caccaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTGGTATACTGATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAATACTTACGGGTTAATTCATTTTTTTTaa         >  2:616951/1‑140 (MQ=14)

                                                                                                                                    ccaAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATaaaa       <  1:2446816/140‑1 (MQ=40)

                                                                                                                                         aTTTTTAAAAAAGTTGTTGTCTTTGAAGAATCAGAGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCGca  <  1:3536502/140‑1 (MQ=255)

CACATGGTTTGGGACCATGGGGTCGCAGGTTCGAATCCTGTCTTCCCGACCATTTTCATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGAGCCCGCTAGGCTCCACCAAAATTTTTAAAAAAGTTGTTGACTTTGAAGAAGCAGCGTTGTATACTAATAAAGTTGCTTTAACAAAGCGAATAAACGAAATGATCTTTGAAAACTAAACAAGACAAAACGTACCTGTTAATTCATTTTTTATAAAATCGCA  >  NZ_CP034943/166061‑166337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.