| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 1773981 | 215 (1.150) | 3 (0.020) | 3/268 | 10.2 | 1.5% | coding (12490/15141 nt) | EO946_RS09125 | non‑ribosomal peptide synthetase |
| ? | NZ_CP034943 | = 3717287 | 175 (0.940) | intergenic (‑189/‑131) | spsA/gerQ | spore coat dTDP‑glycosyltransferase SpsA/spore coat protein GerQ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAGGAGGTTATTGATCATCATCGTCTCGCGAAGCAGATCGCTGATGAATTTTATTCAGATTCTCATGATACGGAGATTTGCTACAGAGGCGGTTTGCGGTATCAGGCTTTTCTAAAAGCGTATTCTGAAACAGGTGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/1773842‑1773981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAGGCTGATGCTTGGAATATGCGGAAAAAGAGCAGCAGACGGCATAGATTTCAATCTGGGCAGCCGCTGTTTTTCATAGACATACACAAACTTTTCTCATATTGGTTTGTATCCCTAGCGCAATTTGCGCATAAGCAACA < NZ_CP034943/3717287‑3717149 AGAGGAGGTTATTGATCATCATCGTCTCGCGAAGCAGATCGCTGATGAATTTTATTCAGATTCTCATGATACGGAGATTTGCTACAGAGGCGGTTTGCGGTATCAGGCTTTTCTAAAAGCGTATTCTGAAACAGGTGAGG > 2:2447871/1‑140AGAGGAGGTTATTGATCATCATCGTCTCGCGAAGCAGATCGCTGATGAATTTTATTCAGATTCTCATGATACGGAGATTTGCTACAGAGGCGGTTTGCGATATCAGGCTTTTCTAAAAGCGTATTCTGAAACAGGTGAGG < 1:1515660/140‑1AGAGGACGTTATTGATCATCATCGTCTCGCGAAGCAGCTCGCTGATGAAGGTTATTCAGATTCTCATGATACGGAGATTTGCTACAGAGGCGGTTTGCGGTATCAGGCTTTTCTAAAAGCGTAATCTGAAACAGGTGAGG < 2:2355277/140‑1 TATTCAGATTCTCATGATACGGAGATTTGCTACAGAGGCGGTTTGCGGTATCAGGCTTTTCTAAAAGCGTATTCTGAAACAGGTGAGGAGGCTGATGCTTGGAATATGCGGAAAAAGAGCAGCA < 1:63686/124‑1 TATTCAGATTCTCATGATACGGAGATTTGCTACAGAGGCGGTTTGCGGTATCAGGCTTTTCTAAAAGCGTATTCTGAAACAGGTGAGGAGGCTGATGCTTGGAATATGCGGAAAAAGAGCAGCA > 2:63686/1‑124 cttAGGAGGCTGATGCTTGGAATATGCGGAAAAACAGCAGCAGACGGCATAGATTTAAATCTGGGCACCCGCTGTTTTTCATAGACAAACACAAACTTTTCTCATATTGGTTTGTATCCCTAGCGCAATTTGCGCATAAG < 1:1695298/137‑1 GAGGCTGATGCTTGGAATATGCGGAAAAAGAGCAGCAGACGGCATAGATTTCAATCTGGGCAGCCGCTGTTTTTCATAGACATACACAAACTTTTCTCATATTGGTTTGTATCCCTAGCGCAATTTGCGCATAAGCAACA < 1:687421/140‑1 AGAGGAGGTTATTGATCATCATCGTCTCGCGAAGCAGATCGCTGATGAATTTTATTCAGATTCTCATGATACGGAGATTTGCTACAGAGGCGGTTTGCGGTATCAGGCTTTTCTAAAAGCGTATTCTGAAACAGGTGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/1773842‑1773981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAGGCTGATGCTTGGAATATGCGGAAAAAGAGCAGCAGACGGCATAGATTTCAATCTGGGCAGCCGCTGTTTTTCATAGACATACACAAACTTTTCTCATATTGGTTTGTATCCCTAGCGCAATTTGCGCATAAGCAACA < NZ_CP034943/3717287‑3717149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |