New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 3299602	284 (0.810)	3 (0.010) +TTTTTCA	3/238	NT	1.1%	intergenic (‑300/+9)	EO946_RS17065/gap	phosphoglycerate kinase/type I glyceraldehyde‑3‑phosphate dehydrogenase
	?	NZ_CP034943	3299603 =	284 (0.810)					intergenic (‑301/+8)	EO946_RS17065/gap	phosphoglycerate kinase/type I glyceraldehyde‑3‑phosphate dehydrogenase
Rejected: Frequency below/above cutoff threshold.

GCCGGTCTTCATGGAAAAAGGGAAAGGGAGTCCGTCCCCTTCCCTTGTCCGCTTTCATTATAGCGCTTCTATTCAAAAGAACCAAGTCAGGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3299509‑3299602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTATAAATTAAAGACCTTTTTTTGCGATGTAAGCTGCAAGGTCAACAACGCGGTTAGAGTAGCCGCTTTCGTTATCGTACCAAGAAATTACTTTTACCATGCTGCCTTCCATAACCATTGTAGAAAGAG  >  NZ_CP034943/3299603‑3299732                                                                                               |||||||                                                                                                                                   GCCGGTCTTCAAGGAAAAAGGGAAAGGGAGTCCGTCCCCTTCCCTTGTCCGCTTTCATTATAGCGCTTCTATTCGAAAGAACCAAGTCAGGTCCTTTTTCAGCTATAAATTAAAGACCTTTTTTTGCGATGTAAGCTGCA                                                                                             <  1:3983285/140‑1                                                                   TTCTATTCGAAAGAACCAAGTCAGGTCCTTTTTCAGCTATAAATTAAAGACCTTTTTTTGCGAGGTAAGCTGCAAGGTAAACAACGCGGTTAGAGTAGCCGCTTTCGTTATCGTACAAAGAGATTACATTTACCATGCTG                           >  2:3115514/1‑140                                                                    TCTATTCGACAGAACCAAGTCAGGTCCTTTTTCAGCTATAAATTAAAGACCTTTTTTTGCGATGTAAGCTGCAAGGTCAACAACGCGGTTAGAGTAGCCGCTTTCGTTATCGTACCAAGAGATTACTTTTACCATGCTGC                          <  2:1162015/140‑1                                                                                            TCCTTTTTCAGCTATAAATTAAAGACCTTTTTTTGCGATGTAAGCTGCAAGGTCAACAACGCGGTTAGAGTAGCCGCTTTCGTTATCGTACCAAGAGATTACTTTTACCATGCTGCCTTCCATAACCATTGTAGAAAGAG  >  1:5219392/1‑140                                                                                               |||||||                                                                                                                                   GCCGGTCTTCATGGAAAAAGGGAAAGGGAGTCCGTCCCCTTCCCTTGTCCGCTTTCATTATAGCGCTTCTATTCAAAAGAACCAAGTCAGGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/3299509‑3299602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTATAAATTAAAGACCTTTTTTTGCGATGTAAGCTGCAAGGTCAACAACGCGGTTAGAGTAGCCGCTTTCGTTATCGTACCAAGAAATTACTTTTACCATGCTGCCTTCCATAACCATTGTAGAAAGAG  >  NZ_CP034943/3299603‑3299732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.