New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	2756352 =	NA (NA)	298 (1.090)	181/300	0.1	49.3%	noncoding (2595/2595 nt)	ISS12	repeat region
	?	CP009974	= 3238018	307 (1.130)					coding (2588/2736 nt)	secA	preprotein translocase subunit SecA

ACGAAGATGGTGGGGATGTTGTACTGCGCTGCAGTCCACAACGCACTGATGCTGTAGTTCGCCGAACCGTCTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGC  >  CP009974/2756281‑2756443                                                                        |                                                                                            aCGAAGATGGTGGGGATGTTGTACTGCGCTGCAGTCCACAACGCACTGATGCTGTAGTT‑‑‑‑‑‑‑‑‑‑‑‑TGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCCGTAGGCGCGCCGCGACGc  >  2:3902181/1‑151 (MQ=14)                                                                        |                                                                                            ACGAAGATGGTGGGGATGTTGTACTGCGCTGCAGTCCACAACGCACTGATGCTGTAGTTCGCCGAACCGTCTGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCTGTTCCACGCTCATTCGGACAGGCAGTCGGAGCGCAGCGACGC  >  CP009974/2756281‑2756443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.