New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 2756352 =NA (NA)298 (1.090) 181/300 0.1 49.3% noncoding (2595/2595 nt) ISS12 repeat region
?CP009974 = 3238018 307 (1.130)coding (2588/2736 nt) secA preprotein translocase subunit SecA

Only 100 of 607 total aligned reads displayed.

AGCTGTTGGAGTCGATCAAGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATC  >  CP009974/3237868‑3238168
                                                                                                                                                      |                                                                                                                                                      
   tGTTGGAGTCGATCAAGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgc                                                                                                                                                     <  1:2044096‑M2/151‑4 (MQ=255)
      tGGAGTCGATCAGGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGa                                                                                                                                                  <  2:4422650/151‑1 (MQ=255)
        gAGTCGATCAAGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGaca                                                                                                                                                >  2:2510087/1‑149 (MQ=255)
        gAGTCGATCAAGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGaaa                                                                                                                                                <  2:5209317/151‑1 (MQ=255)
         aGTCGATCAAGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAg                                                                                                                                               <  1:3882222/151‑1 (MQ=255)
             gATCAAGCGCGACACCATCCGGGTGCGGTCACGCGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacg                                                                                                                                           >  2:5028768‑M2/1‑138 (MQ=255)
                cAAGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgcca                                                                                                                                        <  1:926763‑M2/151‑17 (MQ=255)
                cAAGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGCCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGCAAGTGACCaa                                                                                                                                        >  2:4493220/1‑151 (MQ=255)
                  aGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccatt                                                                                                                                      >  1:3516588‑M2/1‑133 (MQ=255)
                  aGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccatt                                                                                                                                      >  2:168040‑M2/1‑133 (MQ=255)
                  aGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACt                                                                                                                                      <  2:2588410/151‑1 (MQ=255)
                   gcgcGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattc                                                                                                                                     <  1:1900803‑M2/151‑20 (MQ=255)
                    cgcgACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTa                                                                                                                                    >  1:184089/1‑151 (MQ=255)
                    cgcgACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTa                                                                                                                                    <  2:1867423/151‑1 (MQ=255)
                      cgACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGc                                                                                                                                  <  1:2386038/151‑1 (MQ=255)
                       gACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCg                                                                                                                                 >  2:3284456/1‑151 (MQ=255)
                          acCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacacc                                                                                                                              <  2:3994180‑M2/151‑27 (MQ=255)
                          acCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCgagg                                                                                                                              <  1:5116265/151‑1 (MQ=255)
                          acCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCgagg                                                                                                                              >  1:543717/1‑151 (MQ=255)
                                cgcgTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagccc                                                                                                                        <  1:4831589‑M2/151‑33 (MQ=255)
                                cgcgTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagccc                                                                                                                        <  1:1492852‑M2/151‑33 (MQ=255)
                                cgcgTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcgg                                                                                                                                                   <  1:1366199‑M2/124‑6 (MQ=255)
                                   gTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCg                                                                                                                     >  2:4645005/1‑151 (MQ=255)
                                       tGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGAAGTTCCAGCACGCCGCGCCACTGGGtgcggattcgaagccattcggccacgcagcccacgctga                                                                                                                 <  1:2468711‑M2/151‑40 (MQ=255)
                                          cacaCGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGc                                                                                                              <  1:446445/151‑1 (MQ=255)
                                          cacaCGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGc                                                                                                              >  2:2817550/1‑151 (MQ=255)
                                           acacGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCg                                                                                                             <  2:853869/151‑1 (MQ=255)
                                              cGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTa                                                                                                          <  1:3732287/151‑1 (MQ=255)
                                              cGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTa                                                                                                          <  1:2894800/151‑1 (MQ=255)
                                                 aCAGGATCGCCGCGAAGAGGCGGGCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCGTGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGCGCGCCGACGCAGCGGTCGcc                                                                                                       >  2:5389029/1‑151 (MQ=255)
                                                   aGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctg                                                                                                     <  2:4565504‑M2/151‑52 (MQ=255)
                                                    ggTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgt                                                                                                    <  2:2744777‑M2/151‑53 (MQ=255)
                                                      ttCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttc                                                                                                  <  2:434408‑M2/151‑55 (MQ=255)
                                                      ttCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGgc                                                                                                  >  1:83481/1‑151 (MQ=255)
                                                        cgccgcGAAGGCCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGgcgc                                                                                                <  1:395521/151‑1 (MQ=255)
                                                           cgcgAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAg                                                                                             <  1:276864/151‑1 (MQ=255)
                                                            gcgAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgct                                                                                            <  1:3086306‑M2/151‑61 (MQ=255)
                                                            gcgAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGt                                                                                            >  2:2246591/1‑151 (MQ=255)
                                                              gAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctca                                                                                          <  2:3819712‑M2/151‑63 (MQ=255)
                                                               aaGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcat                                                                                         <  2:3664277‑M2/151‑64 (MQ=255)
                                                                 gACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCa                                                                                       <  2:1814170/151‑1 (MQ=255)
                                                                  aCCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcg                                                                                      >  2:3944639‑M2/1‑85 (MQ=255)
                                                                   ccgggCCGGAGAAGAAGCCCGGCTGCGCGGCGAGGGCGAAGAGCTGGCGGGACGCATGCAGTTCCAGCAGGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAAt                                                                                     <  2:4210864/148‑1 (MQ=255)
                                                                     cGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggac                                                                                   <  1:2577499‑M2/151‑70 (MQ=255)
                                                                        ccGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacagg                                                                                <  2:1405538‑M2/151‑73 (MQ=255)
                                                                        ccGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttacacgctcattcggacagg                                                                                <  2:2140765‑M2/151‑73 (MQ=255)
                                                                         cGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggc                                                                               >  1:1745302‑M2/1‑78 (MQ=255)
                                                                         cGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAg                                                                               <  1:4325118/151‑1 (MQ=255)
                                                                            agaagaagCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAg                                                                            <  1:4617553/151‑1 (MQ=255)
                                                                              aagaggCCCTCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCt                                                                          <  1:1587453/151‑1 (MQ=255)
                                                                                 aagCCCGCGTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggag                                                                       >  2:2886217‑M2/1‑70 (MQ=255)
                                                                                 aagCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggag                                                                       >  1:3285863‑M2/1‑70 (MQ=255)
                                                                                  agCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGc                                                                      <  1:4056238/151‑1 (MQ=255)
                                                                                   gCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcg                                                                     >  2:5280495‑M2/1‑68 (MQ=255)
                                                                                   gCCCGCCGGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcg                                                                     >  2:3034734‑M2/1‑68 (MQ=255)
                                                                                     ccGCCTGCGCCGCCAGGCCGGAGGGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcagtcggacaggcagtcggagcgca                                                                   >  2:4832614‑M2/1‑66 (MQ=255)
                                                                                      cGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttc                                                                                                  <  1:3226975‑M2/119‑55 (MQ=255)
                                                                                         cTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcga                                                               <  1:2180149‑M2/151‑90 (MQ=255)
                                                                                          tGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgac                                                              >  1:1696532‑M2/1‑61 (MQ=255)
                                                                                             gccgcGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGa                                                                                   >  2:337714/1‑127 (MQ=255)
                                                                                             gccgcGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGcc                                                           <  2:3134321/151‑1 (MQ=255)
                                                                                             gccgcGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGcc                                                           >  2:130043/1‑151 (MQ=255)
                                                                                             gccgcGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGcc                                                           <  1:4914949/151‑1 (MQ=255)
                                                                                               cgcgAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGt                                                         >  2:2448827/1‑151 (MQ=255)
                                                                                               cgcgAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGt                                                         <  1:3412835/151‑1 (MQ=255)
                                                                                                gcgAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggg                                                        <  1:1783891‑M2/151‑97 (MQ=255)
                                                                                                  gAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggt                                                      <  2:612332‑M2/151‑99 (MQ=255)
                                                                                                  gAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggt                                                      >  1:1031114‑M2/1‑53 (MQ=255)
                                                                                                  gAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCt                                                      >  1:5006916/1‑151 (MQ=255)
                                                                                                   aGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTg                                                     <  2:79129/151‑1 (MQ=255)
                                                                                                      ccGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggca                                                  >  1:1971899‑M2/1‑49 (MQ=255)
                                                                                                       cGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGgtgt                                                 <  2:1192745/151‑1 (MQ=255)
                                                                                                        gAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGtgtg                                                <  2:2374038/151‑1 (MQ=255)
                                                                                                         aaGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtctgagcgcagcgacgcaggggtggcattg                                               <  2:3612396‑M2/151‑106 (MQ=255)
                                                                                                              cTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagt                                          <  1:331262‑M2/151‑111 (MQ=255)
                                                                                                              cTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagt                                          >  2:4097230‑M2/1‑41 (MQ=255)
                                                                                                               gggcGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtc                                         >  2:4276636‑M2/2‑40 (MQ=255)
                                                                                                               gggCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCggg                                         <  2:2000853/150‑1 (MQ=255)
                                                                                                                ggCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtcc                                        >  2:3109327‑M2/1‑39 (MQ=255)
                                                                                                                   gAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCaag                                     >  1:4346868/1‑151 (MQ=255)
                                                                                                                     gTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggtt                                   <  1:5243153‑M2/151‑118 (MQ=255)
                                                                                                                          aTGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCa                              <  1:4263118/151‑1 (MQ=255)
                                                                                                                             cAGTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcg                           >  1:714807‑M2/1‑26 (MQ=255)
                                                                                                                               gTTCCAGCACGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtc                         >  2:2044243‑M2/1‑24 (MQ=255)
                                                                                                                                ttCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCAtt                        <  2:320240/151‑1 (MQ=255)
                                                                                                                                 tCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTg                       <  1:1246610/151‑1 (MQ=255)
                                                                                                                                     gCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCAc                   <  1:4136119/151‑1 (MQ=255)
                                                                                                                                     gCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCAc                   <  1:1000176/151‑1 (MQ=255)
                                                                                                                                       aCGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccactctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtcgtcaattt                 <  2:1016054‑M2/151‑136 (MQ=255)
                                                                                                                                       aCGCCGCTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtcgtcaattt                 <  2:1079551‑M2/151‑136 (MQ=255)
                                                                                                                                       aCGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACgg                 >  2:5115350/1‑151 (MQ=255)
                                                                                                                                         gccgcTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtcgtcaatttct               <  2:3877490‑M2/151‑138 (MQ=255)
                                                                                                                                          ccgcTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCa              <  1:1129728/151‑1 (MQ=255)
                                                                                                                                           cgcTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtcgtcaatttctgc             <  1:5338397‑M2/151‑140 (MQ=255)
                                                                                                                                             cTGCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtcgtcaatttctgcgt           <  1:4702966‑M2/151‑142 (MQ=255)
                                                                                                                                              tGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATc          >  2:4778693/1‑151 (MQ=255)
                                                                                                                                               gCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtcgtcaatttctgcgtcc         >  1:3663099‑M2/1‑8 (MQ=255)
                                                                                                                                               gCACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtcgtcaatttctgcgtac         >  1:2685927‑M2/1‑8 (MQ=255)
                                                                                                                                                cACCGGGtgcggattccacgccattcggacactcagcccacgctgatccggacacctgttccacgctcattcggacaggcagtcggagcgcagcgacgcaggggtggcattgttagtccgggttggctggcgtcgtcaatttctgcgtccg        >  2:4064850‑M2/1‑7 (MQ=255)
                                                                                                                                                cACCGGGCCTGGAAAGTGAGCAACTTAGCGGGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGa        <  2:1579280/151‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
AGCTGTTGGAGTCGATCAAGCGCGACACCATCCGCGTGCTGTCACACGTACAGGTTCGCCGCGAAGACCCGGCCGAAGAAGAAGCCCGCCTGCGCCGCGAGGCCGAAGAGCTGGCGAGTCGCATGCAGTTCCAGCACGCCGCTGCACCGGGCCTGGAAAGTGAGCAACTTAGCGAGGAGGGTGCCGAAGTAGCGGTAGCCTCGGCGCCAGTACGCAATGACCAGAAGCTGGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATC  >  CP009974/3237868‑3238168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.