| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009974 | = 5324681 | 0 (0.000) | 242 (0.930) | 154/286 | 0.4 | 100% | intergenic (+71/‑180) | RPPX_23670/RPPX_23675 | histidine kinase/integrase |
| ? | CP009974 | 5327261 = | NA (NA) | intergenic (+113/‑39) | RPPX_23680/RPPX_23685 | ATPase AAA/transposase | |||||
Only 100 of 288 total aligned reads displayed.
TCGGGCTGGAGATTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCTGCGGATTCCATGATCATCCGGACACCCATTCCACCGACATCCGGACACTAATTCCACAAGCATCCGGACACCGATTCCACGGCCATCCGGACACCTTCAGGCAGGCAGCAACGCAGGACTATTCACTACTATCGACCTCTTTTTTCGAA > CP009974/5324531‑5324831 | agaTTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaag > 1:1031285‑M1/1‑142 (MQ=255) aTTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagtt < 2:2923197‑M1/151‑12 (MQ=255) tGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttgg < 2:2426397‑M1/151‑14 (MQ=255) tGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttgg > 2:4432331‑M1/1‑138 (MQ=255) ggCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttgga < 1:1430188‑M1/151‑15 (MQ=255) gAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatcc > 2:5177595‑M1/1‑128 (MQ=255) aaTTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGACCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatcca > 1:584140‑M1/1‑127 (MQ=255) ttGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaac > 2:829045‑M1/1‑125 (MQ=255) ttGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaac < 1:401892‑M1/151‑27 (MQ=255) tgggtgggGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacc > 1:217135‑M1/1‑124 (MQ=255) gtgggGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaaccctt < 1:1308508‑M1/151‑31 (MQ=255) aGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatc < 2:2013299‑M1/151‑39 (MQ=255) aGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatc > 2:1305647‑M1/1‑113 (MQ=255) tGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatg < 2:1454292‑M1/151‑43 (MQ=255) ggTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgg > 2:904488‑M1/1‑108 (MQ=255) ggTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgg > 1:2035464‑M1/1‑108 (MQ=255) gTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatggg > 1:2280884‑M1/1‑107 (MQ=255) gTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatggg > 1:237648‑M1/1‑107 (MQ=255) gTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatggg < 2:4565866‑M1/151‑45 (MQ=255) ttGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaa < 1:3803923‑M1/151‑48 (MQ=255) ttGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaa < 1:3654481‑M1/151‑48 (MQ=255) tGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaag > 2:1793486‑M1/1‑103 (MQ=255) aCTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtac < 2:143235‑M1/151‑52 (MQ=255) aCTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtac > 1:1680347‑M1/1‑100 (MQ=255) cTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtaca > 1:4187899‑M1/1‑99 (MQ=255) tGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaccccttgggggatctatgcgtcagtacac > 2:3034258‑M1/1‑98 (MQ=255) tGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacac > 1:2851646‑M1/1‑98 (MQ=255) tGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccctgggggatctatgggtaagtacac > 2:3006212‑M1/1‑98 (MQ=255) gCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacacc > 1:4728620‑M1/1‑97 (MQ=255) ccGCTTGCGAATCTATGCAAGTAAAGCCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccga < 2:4894350‑M1/151‑57 (MQ=255) gCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagc > 1:3148287‑M1/1‑93 (MQ=255) ggATCTAGGCAAGTAAAAGCTGGGGCCGGTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattca < 2:3100210‑M1/151‑65 (MQ=255) ggATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattca < 2:367074‑M1/151‑65 (MQ=255) ggATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattca < 2:567619‑M1/151‑65 (MQ=255) gATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaa > 2:3527845‑M1/1‑86 (MQ=255) tCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagc > 1:3457864‑M1/1‑84 (MQ=255) tCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagc > 2:1915942‑M1/1‑84 (MQ=255) tAGGAAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCGGCACCCACGAGATGGCGCGACAGTTGGACTGCCcccaagaaggtggacactaatccaacccttgggggagctatggagtattaaacagagcaattcaagctc > 2:1034750‑M1/1‑82 (MQ=255) aGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACATGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctca > 1:3732058‑M1/1‑81 (MQ=255) ggCAAGTAACAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcac < 2:3934559‑M1/151‑72 (MQ=255) gCAAGTAAAAGCAGGGGCCGCTTTGCGGCCATTGGCGGGCACGCCCGCTCCCACAAGTAGGCGCGACATTTGGACTGCCcccaagaagttggacaataatccaacccttgggggatctatgggtaagtacaacgagcaattcaagctcaca < 2:3195471‑M1/151‑73 (MQ=255) aaaaGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatc < 1:3378678‑M1/151‑79 (MQ=255) aaaaGCTGGGGCCGCTTTGCGGCCCGTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatc < 2:3831876‑M1/151‑79 (MQ=255) aaaGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatca > 1:4993835‑M1/1‑72 (MQ=255) aaGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcac > 1:4046248‑M1/1‑71 (MQ=255) gCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtgagtccaccgagcacttcaagctcacagcgatcaccg > 1:5198224‑M1/1‑69 (MQ=255) gCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacag > 1:1552753‑M1/1‑69 (MQ=255) tGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcc < 2:360055‑M1/151‑85 (MQ=255) tGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcc > 2:3312409‑M1/1‑67 (MQ=255) gggCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagccta > 1:2482528‑M1/1‑65 (MQ=255) gCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATCTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacc > 1:1925362‑M1/1‑63 (MQ=255) cGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctg > 2:1410913‑M1/1‑61 (MQ=255) cGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaaccctcgggggatacatgggtaagtacaccgagcaattcaagctcacagccatcacagcctacctg > 1:507646‑M1/1‑61 (MQ=255) tttGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggac > 1:4622629‑M1/1‑58 (MQ=255) ttGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacg < 1:5311598‑M1/151‑95 (MQ=255) gCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggc > 2:2075885‑M1/1‑55 (MQ=255) cGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggca < 1:446364‑M1/151‑98 (MQ=255) ccTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaa > 1:2232987‑M1/1‑50 (MQ=255) ttCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacg < 2:3774905‑M1/151‑104 (MQ=255) ttCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacg < 1:4650735‑M1/151‑104 (MQ=255) ttCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttggggaatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacg < 1:883271‑M1/151‑104 (MQ=255) tCGCGGGCACGGCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacgg < 2:4149861‑M1/151‑105 (MQ=255) tCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacgg > 2:2475496‑M1/1‑47 (MQ=255) gggCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttc < 1:177469‑M1/151‑109 (MQ=255) ggaacgcacgctcgAACAAGTTGGCGCGACATTTGGACTGCAcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttcc < 2:1656572‑M1/148‑110 (MQ=255) gCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaag > 1:4852571‑M1/1‑37 (MQ=255) gCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaag < 2:5056680‑M1/151‑115 (MQ=255) cccGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaagg > 2:708221‑M1/1‑36 (MQ=255) cccGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaagg < 1:2337098‑M1/151‑116 (MQ=255) ccGCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggt > 1:768094‑M1/1‑35 (MQ=255) gCTCCCACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtgg > 1:113558‑M1/1‑33 (MQ=255) cccACAAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctc > 1:1638336‑M1/1‑30 (MQ=255) cacaAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaa > 2:1596043‑M1/1‑28 (MQ=255) acaAGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaac > 2:4404489‑M1/1‑27 (MQ=255) aaGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacac < 1:3969657‑M1/151‑127 (MQ=255) aaGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacac > 1:1219115‑M1/1‑25 (MQ=255) aGTTGGCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacact > 1:422891‑M1/1‑24 (MQ=255) ggCGCGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaagtcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttagg > 2:1744308‑M1/1‑20 (MQ=255) gcgcGACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggt < 2:4667813‑M1/151‑133 (MQ=255) cgcgACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggta > 2:3862436‑M1/1‑18 (MQ=255) gcgACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtat > 1:864837‑M1/1‑17 (MQ=255) gACATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcg > 1:1107514‑M1/1‑15 (MQ=255) cATTTGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgat < 2:237648‑M1/151‑139 (MQ=255) tttGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgattt > 2:4832587‑M1/1‑11 (MQ=255) tttGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctaccaggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatgt > 2:2782688‑M1/1‑11 (MQ=255) tGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttca < 1:4933282‑M1/151‑143 (MQ=255) tGGACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttca > 1:3288423‑M1/1‑9 (MQ=255) ggACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcag > 1:2680500‑M1/1‑8 (MQ=255) gACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagt > 2:4552421‑M1/1‑7 (MQ=255) gACTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagt > 2:1158039‑M1/1‑7 (MQ=255) aCTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtc > 2:4317814‑M1/1‑6 (MQ=255) cTGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtct < 1:2017595‑M1/151‑147 (MQ=255) cTGCCcccaagaagttggacaccaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtct < 2:1347216‑M1/151‑147 (MQ=255) tGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctg > 2:2725660‑M1/1‑4 (MQ=255) tGCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctg > 1:2826134‑M1/1‑4 (MQ=255) gCCcccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgc < 2:122900‑M1/151‑149 (MQ=255) cccccacgaagttggacactaatccaccccttggggaatctatgggtaagtacaccgtgcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgct < 2:263167‑M1/151‑150 (MQ=255) cccccaagaagttggacactaatccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgct < 1:2072021‑M1/151‑150 (MQ=255) ccccaagaagttggacactaatccaccccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgctt < 1:3006212‑M1/151‑151 (MQ=255) ccccaagaagttggacaccactccaacccttgggggatctatgggtaagtacaccgagcaattcaagctcacagcgatcacagcctacctggacggcagcaacggtttccgaaaggtggctcaacacttaggtatcgatttcagtctgctt < 2:5303295‑M1/151‑151 (MQ=255) | TCGGGCTGGAGATTGGCGAAAGCGAATTGGGTGGGGCCAGGCTGGTATTGCACTGCCCGCTTGCGGATCTAGGCAAGTAAAAGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAAGTTGGCGCGACATTTGGACTGCCTGCGGATTCCATGATCATCCGGACACCCATTCCACCGACATCCGGACACTAATTCCACAAGCATCCGGACACCGATTCCACGGCCATCCGGACACCTTCAGGCAGGCAGCAACGCAGGACTATTCACTACTATCGACCTCTTTTTTCGAA > CP009974/5324531‑5324831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |