New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	3237442 =	269 (0.990)	354 (1.310)	199/298	0.0	57.0%	coding (2012/2736 nt)	secA	preprotein translocase subunit SecA
	?	CP009974	3486774 =	NA (NA)					noncoding (1/2595 nt)	ISS12	repeat region

ACAGGGATGCGGATTCCACGCTGACTCGGACACCCATTCCACGCGCATCCGGACAGTGATTCCACGCTGATCCGGACACTCATTCCACGAGCATCCGGACACCGACTCCACGGTCATCCGGACACTTTTCTGGCAGGCAGCCACGCAGGATTTATT  >  CP009974/3486766‑3486921         |                                                                                                                                                    tcaagaaTGCGGATTCCACGCTGACTCGGACACCCATTCCACGCGCATCCGGACAGTGATTCCACGCTGATCCGGACACTCATTCCACGAGCATCCGGACACCGACTCCACGGTCATCCGGACACTTTTCTGGCAGGCAGCCACGCAGGAt       >  2:4516884/7‑151 (MQ=11)      aaTGCGGATTCCACGCTGACTCGGACACCCATTCCACGCGCATCCGGACAGTGATTCCACGCTGATCCGGACACTCATTCCACGAGCATCCGGACACCGACTCCACGGTCATCGGGACACTTTTCTGGCAGGCAGCCACGGAGGAGTTAtc  >  2:756374/2‑150 (MQ=2)         |                                                                                                                                                    ACAGGGATGCGGATTCCACGCTGACTCGGACACCCATTCCACGCGCATCCGGACAGTGATTCCACGCTGATCCGGACACTCATTCCACGAGCATCCGGACACCGACTCCACGGTCATCCGGACACTTTTCTGGCAGGCAGCCACGCAGGATTTATT  >  CP009974/3486766‑3486921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.