Predicted mutation
evidence seq id position mutation annotation gene description
MC MC JC CP009974 5,798,527 Δ2,603 bp intergenic (‑15/–) RPPX_25885 ← / – integrase/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009974 1–2595 2595 1–2595 NA [0] [0] 212 RPPX_00005–RPPX_00010 RPPX_00005,RPPX_00010
* * ÷ CP009974 5798527 5798534 8 211 [1] [0] NA RPPX_25885/– integrase/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 2596 =0 (0.000)199 (0.800) 140/284 0.7 100% intergenic (‑203/+211) RPPX_00010/RPPX_00015 integrase/peptidase S24
?CP009974 = 5798526 0 (0.000)intergenic (‑14/–) RPPX_25885/– integrase/–

Only 100 of 212 total aligned reads displayed.

TGAATAAATCCTGCGTGGCTGCCTGCCAGAAAAGTGTCCGGATGACCGTGGAGTCGGTGTCCGGATGCTCGTGGAATGAGTGTCCGGATCAGCGTGGAATCACTGTCCGGATGCGCGTGGAATGGGTGTCCGAGTCAGCGTGGAATCCGCACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAGTCGGGC  >  CP009974/2446‑2746
                                                                                                                                                      |                                                                                                                                                      
ctgactcgataagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaa                                                                                                                                                        <  1:1297951‑M1/1‑1 (MQ=255)
ctgactcgataagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccaacctcatgccgctgccctcaaa                                                                                                                                                        <  2:2625094‑M1/1‑1 (MQ=255)
 tgactcgataagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaac                                                                                                                                                       <  1:520206‑M1/2‑1 (MQ=255)
  gactcgataagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctagggcttttgttgcgaataccagcctcacgccgctgccctaaaaca                                                                                                                                                      <  2:4664700‑M1/3‑1 (MQ=255)
   actcgataagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaacac                                                                                                                                                     <  1:4082317‑M1/4‑1 (MQ=255)
    ctcgataagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctacaACACt                                                                                                                                                    <  2:537400‑M1/5‑1 (MQ=255)
       gataagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTcc                                                                                                                                                 <  2:2986959‑M1/8‑1 (MQ=255)
         taagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCaa                                                                                                                                               <  2:1426747‑M1/10‑1 (MQ=255)
         taagcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCaa                                                                                                                                               <  1:4526098‑M1/10‑1 (MQ=255)
           agcgtgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATg                                                                                                                                             <  1:2068861‑M1/12‑1 (MQ=255)
               tgtgccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGAtt                                                                                                                                         >  2:1604537‑M1/136‑151 (MQ=255)
                   ccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCt                                                                                                                                     <  2:4419522‑M1/20‑1 (MQ=255)
                   ccaaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCt                                                                                                                                     >  1:3495083‑M1/132‑151 (MQ=255)
                    caaaggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaacACACTTCCAATGGATTGCCtt                                                                                                                                    <  2:3064080‑M1/21‑1 (MQ=255)
                        ggaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGa                                                                                                                                >  2:5076156‑M1/127‑151 (MQ=255)
                         gaaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGaa                                                                                                                               >  2:5201374‑M1/126‑151 (MQ=255)
                          aaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAg                                                                                                                              >  2:2924206‑M1/125‑151 (MQ=255)
                          aaggattgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAg                                                                                                                              >  2:1244824‑M1/125‑151 (MQ=255)
                              attgagctggctcgactggccatccctctgacccaatcagcaacggaaatccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTg                                                                                                                          <  1:4035252‑M1/31‑1 (MQ=255)
                               ttgagctggctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTgg                                                                                                                         <  1:4608083‑M1/32‑1 (MQ=255)
                                        ctcgactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAActgctg                                                                                                                <  1:4255662‑M1/41‑1 (MQ=255)
                                          gggctggccctccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGtt                                                                                                              >  2:1680838‑M1/109‑151 (MQ=255)
                                           gactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTc                                                                                                             <  1:2937157‑M1/44‑1 (MQ=255)
                                           gactggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTc                                                                                                             <  2:2388334‑M1/44‑1 (MQ=255)
                                             ctggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaacACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCCGTtccc                                                                                                           <  2:1356164‑M1/46‑2 (MQ=255)
                                               ggccatccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCaga                                                                                                         >  2:849278‑M1/104‑151 (MQ=255)
                                                   atccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAgggg                                                                                                     >  1:4218726‑M1/100‑151 (MQ=255)
                                                    tccctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGt                                                                                                    >  1:3140212‑M1/99‑151 (MQ=255)
                                                      cctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTc                                                                                                  >  1:4945233‑M1/97‑151 (MQ=255)
                                                       ctctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCa                                                                                                 >  2:1848353‑M1/96‑151 (MQ=255)
                                                         ctgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGa                                                                                               >  2:2706508‑M1/94‑151 (MQ=255)
                                                          tgacccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaagaccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGaa                                                                                              >  2:3897355‑M1/93‑151 (MQ=255)
                                                            acccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAgg                                                                                            <  1:1389516‑M1/61‑1 (MQ=255)
                                                              ccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTg                                                                                          <  1:5016554‑M1/63‑1 (MQ=255)
                                                              ccaatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTg                                                                                          <  1:1571197‑M1/63‑1 (MQ=255)
                                                               caatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTgg                                                                                         <  1:2513444‑M1/64‑1 (MQ=255)
                                                                aatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGgc                                                                                        <  2:968080‑M1/65‑1 (MQ=255)
                                                                aatcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGgc                                                                                        <  2:4949084‑M1/65‑1 (MQ=255)
                                                                 atcagcaacggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGgcg                                                                                       >  2:3695869‑M1/86‑151 (MQ=255)
                                                                    agcaatggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaagACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCgg                                                                                    >  1:3294875‑M1/83‑151 (MQ=255)
                                                                        acggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGActc                                                                                >  1:1838875‑M1/79‑151 (MQ=255)
                                                                         cggaaagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGActct                                                                               <  1:3353645‑M1/74‑1 (MQ=255)
                                                                             aagccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAg                                                                           <  1:2910195‑M1/78‑1 (MQ=255)
                                                                              agccttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAgg                                                                          >  2:4583151‑M1/73‑151 (MQ=255)
                                                                                 cttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCACTGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGCGGTCAGAAGGTGGCGCGGACTCTacagggct                                                                       <  2:4100524‑M1/82‑4 (MQ=255)
                                                                                 cttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGAtt                                                                       <  1:2356355‑M1/82‑1 (MQ=255)
                                                                                 cttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGAtt                                                                       <  2:335502‑M1/82‑1 (MQ=255)
                                                                                  ttcaaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGAttt                                                                      <  1:202880‑M1/83‑1 (MQ=255)
                                                                                   tcaaaggatcgacctgctaatgctaggtcttttgttgcgaatacccgcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTa                                                                     >  1:1801274‑M1/68‑151 (MQ=255)
                                                                                    caaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTAc                                                                    >  2:328655‑M1/67‑151 (MQ=255)
                                                                                     aaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACt                                                                   <  1:2130224‑M1/86‑1 (MQ=255)
                                                                                     aaaggatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACt                                                                   >  1:2243618‑M1/66‑151 (MQ=255)
                                                                                         gatcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACg                                                               >  1:72327‑M1/62‑151 (MQ=255)
                                                                                           tcgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGAt                                                             <  2:2991089‑M1/92‑1 (MQ=255)
                                                                                            cgacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGAtt                                                            >  2:2550720‑M1/59‑151 (MQ=255)
                                                                                             gacctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTc                                                           <  2:203800‑M1/94‑1 (MQ=255)
                                                                                              acctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTcc                                                          <  2:2112737‑M1/95‑1 (MQ=255)
                                                                                               cctgctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTccc                                                         <  2:2846268‑M1/96‑1 (MQ=255)
                                                                                                  gctaatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCAcc                                                      <  1:471161‑M1/99‑1 (MQ=255)
                                                                                                    taatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGCTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCCACAGGATTGACTCACGATTCCCAcccc                                                    <  2:4361402‑M1/101‑1 (MQ=255)
                                                                                                     aatgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCt                                                   <  2:1620655‑M1/102‑1 (MQ=255)
                                                                                                      atgctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTc                                                  <  1:4839015‑M1/103‑1 (MQ=255)
                                                                                                        gctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAg                                                >  1:282576‑M1/47‑151 (MQ=255)
                                                                                                         ctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGa                                               >  1:4580517‑M1/46‑151 (MQ=255)
                                                                                                         ctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGa                                               <  2:1750702‑M1/106‑1 (MQ=255)
                                                                                                         ctaggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCAGCTCCAGAGGGGTTCAGGAGGTGGCGCGGTCTCTACAGGATTTACTAACGCTTCCCACCCCTCagg                                               <  2:4280‑M1/106‑2 (MQ=255)
                                                                                                           aggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATc                                             <  1:1261530‑M1/108‑1 (MQ=255)
                                                                                                           aggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATc                                             >  2:2130435‑M1/44‑151 (MQ=255)
                                                                                                            ggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCg                                            >  2:2180784‑M1/43‑151 (MQ=255)
                                                                                                            ggtcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCg                                            <  1:1171941‑M1/109‑1 (MQ=255)
                                                                                                              tcttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCgtt                                          >  2:3125969‑M1/41‑151 (MQ=255)
                                                                                                               cttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCgttg                                         <  1:3645327‑M1/112‑1 (MQ=255)
                                                                                                               cttttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACACGATTTACTAACGCTTCCCACACCTCAGAtcgtcg                                         <  2:4574376‑M1/112‑3 (MQ=255)
                                                                                                                  ttgttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGttgttg                                      <  1:2889243‑M1/115‑1 (MQ=255)
                                                                                                                    gttgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCt                                    <  2:477972‑M1/117‑1 (MQ=255)
                                                                                                                      tgcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCa                                  >  1:2209295‑M1/33‑151 (MQ=255)
                                                                                                                       gcgaataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAg                                 >  1:639980‑M1/32‑151 (MQ=255)
                                                                                                                          aataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTAc                              >  1:1699553‑M1/29‑151 (MQ=255)
                                                                                                                           ataccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACg                             <  2:2742008‑M1/124‑1 (MQ=255)
                                                                                                                             agcagcctcatgccgctgccctaaaACACGTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATGCCCACCCCTCAGATCGTTGTTGCTCAGTACgat                           >  2:351641‑M1/26‑151 (MQ=255)
                                                                                                                              ccagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACgatg                          <  1:2681950‑M1/127‑1 (MQ=255)
                                                                                                                               cagcctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACgatga                         <  1:2993650‑M1/128‑1 (MQ=255)
                                                                                                                                  cctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGACGCCTGGCAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTTCTGCTCAGTACGATAATCg                      <  1:2388660‑M1/131‑1 (MQ=255)
                                                                                                                                  cctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCg                      >  2:2953750‑M1/21‑151 (MQ=255)
                                                                                                                                  cctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCg                      <  2:1317439‑M1/131‑1 (MQ=255)
                                                                                                                                   ctcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCgg                     <  2:902649‑M1/132‑1 (MQ=255)
                                                                                                                                    tcatgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGc                    <  1:3770079‑M1/133‑1 (MQ=255)
                                                                                                                                      atgccgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGt                  <  1:1539804‑M1/135‑1 (MQ=255)
                                                                                                                                         ccgctgctctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCtt               >  2:3220029‑M1/14‑151 (MQ=255)
                                                                                                                                          cgctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTg              >  2:1482830‑M1/13‑151 (MQ=255)
                                                                                                                                           gctgccctaaaACACTTCCAATGGCTTGCCTTATGAAGCCTGGAAACTGCTGTTACAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTgg             >  1:3068597‑M1/12‑151 (MQ=255)
                                                                                                                                            ctgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTAAGTACGATGATCGGCGTCTTGGc            <  1:1024384‑M1/141‑1 (MQ=255)
                                                                                                                                             tgccctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGcc           <  1:592574‑M1/142‑1 (MQ=255)
                                                                                                                                                cctaaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAg        >  1:3796890‑M1/7‑151 (MQ=255)
                                                                                                                                                  taaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAGTc      <  2:3951260‑M1/147‑1 (MQ=255)
                                                                                                                                                   aaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAGTCg     <  1:2691055‑M1/148‑1 (MQ=255)
                                                                                                                                                   aaaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAGTCg     <  2:3747921‑M1/148‑1 (MQ=255)
                                                                                                                                                    aaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAGTCgg    >  2:701593‑M1/3‑151 (MQ=255)
                                                                                                                                                    aaACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAGTCgg    <  1:2841398‑M1/149‑1 (MQ=255)
                                                                                                                                                     aACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAGTCggg   >  1:5149313‑M1/2‑151 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
TGAATAAATCCTGCGTGGCTGCCTGCCAGAAAAGTGTCCGGATGACCGTGGAGTCGGTGTCCGGATGCTCGTGGAATGAGTGTCCGGATCAGCGTGGAATCACTGTCCGGATGCGCGTGGAATGGGTGTCCGAGTCAGCGTGGAATCCGCACACTTCCAATGGATTGCCTTATGAAGCCTGGAAACTGCTGTTCCAGAGGGGTTCAGAAGGTGGCGCGGACTCTACAGGATTTACTAACGATTCCCACCCCTCAGATCGTTGTTGCTCAGTACGATGATCGGCGTCTTGGCCAAGTCGGGC  >  CP009974/2446‑2746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑