| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 781369 = | 43 (0.670) | 20 (0.320) +GAG |
7/284 | 7.3 | 39.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521006 | 21 (0.330) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < U00096/781478‑781369‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGG < U00096/2521006‑2520906 ||||| CCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCC > 2:166358/1‑148 CTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGG < 1:166358/148‑1 CACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTG > 2:166359/1‑92 AAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTG < 1:166359/92‑1 GTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG < 2:166363/75‑1 GTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCGAACCGC < 1:166319/97‑1 GTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCGAACCGC > 2:166319/1‑97 TCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGG < 1:166323/67‑1 TCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGG > 2:166323/1‑67 ACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCC < 2:166362/90‑1 ACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGA > 1:166321/1‑75 ACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGA < 2:166321/75‑1 ACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCT < 2:166361/86‑1 TTGATTATAAGTCAACTGCTCTACCTAGTTTTCTACCGACCGT‑ACGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCA < 2:543653/140‑1 TTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCG < 1:166360/66‑1 TTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCT < 1:166316/80‑1 AAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GGGGTGGGTGATGCCGGGATAGAACCGCCGACCCCCTCCTTG > 2:166316/1‑80 AAGTCAACTGCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAAT > 1:166311/1‑108 GCTCTACCAACTGAGCTAACGACCCG‑A‑GTGGTGGGTGATGACG < 1:166357/43‑1 CTGAGCTAACGACCCGAA‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGG > 1:543654/1‑120 CTGAGCTAACGACCCGAA‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGG < 2:543654/120‑1 GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCC < 1:543669/36‑1 ||||| CCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < U00096/781478‑781369‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGG < U00096/2521006‑2520906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |