New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	U00096	781369 =	43 (0.670)	20 (0.320) +GAG	7/284	7.3	39.0%	noncoding (1/76 nt)	lysZ	tRNA‑Lys
	?	U00096	= 2521006	21 (0.330)					noncoding (76/76 nt)	valU	tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.

CATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGG  >  U00096/781230‑781507                                                                                                                                            |                                                                                                                                           cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGtt                                                                                                                                     <  1:166341/147‑1 (MQ=255)       aCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAAACATTCAGGTAACGACCGAATGGGTCGTTAGcgaag                                                                                                                              >  2:166393/1‑144 (MQ=21)          cAGATGTTAAGCGTGAAGGATCACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTg                                                                                                                           <  2:166342/148‑1 (MQ=255)           aGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTgg                                                                                                                          >  2:166356/1‑148 (MQ=255)            gATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGt                                                                                                                         >  2:166349/1‑148 (MQ=255)                 tAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGc                                                                                                                    <  1:166343/148‑1 (MQ=255)                              tAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTaa                                                                                                       >  1:166392/1‑148 (MQ=255)                                 cGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGACCCGAGGAGAAATCTTTCAGGTAACACCCGTAAGGGTCGTTAGCTCAGTTGGTTGAGCAGTTGACTTTTAATc                                                                                                     >  1:166352/1‑147 (MQ=37)                                      cgcCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGGTGACTTTTAATCAATTgg                                                                                               >  2:166365/1‑148 (MQ=255)                                              aCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATATTTCAGGTAACAACCGTATGGGTCGTTAGCTCAGTTGGGAGGGCAGTTGACGTTTAATCAATTGGTCGCAGGt                                                                                       >  2:166371/1‑148 (MQ=38)                                               cGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATATTAAAGATTGTACACGAGTAAAAATATTACAAGTAACAACCGAATCGGTACTTAGATCAGTTGGTAGAGCAGATGACTTTTAATCAAATGGTCTCAGGtt                                                                                      >  2:166373/1‑148 (MQ=21)                                                 gCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTCGCTCAGGTGGTAGAGCAGTTGGCGTTTAATCTATTGGTCGCCGGTTCg                                                                                    >  1:166399/1‑148 (MQ=38)                                                      tAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAgg                                                                                        >  1:166390/1‑139 (MQ=255)                                                                 aagcgaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACcca                                                                    <  2:166344/148‑1 (MQ=255)                                                                                cACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtgg                                                     <  1:166345/148‑1 (MQ=255)                                                                                       caccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAc                                                                                                             >  1:166346/1‑85 (MQ=255)                                                                                               ttAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAAc                                      >  2:166375/1‑148 (MQ=255)                                                                                                tAAAGATTGTCCCCGAGTAAAAATCTTTCATGTAACACCCGTATGTTTCGTTATCTCAGTTGGTAGAGCAGTTTACTTTTACTCATTTGTTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTagag                                         <  2:166347/144‑1 (MQ=25)                                                                                                tAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACg                                     >  2:166367/1‑148 (MQ=255)                                                                                                  caGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTACTCATTTGGGCGAAGGGTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTg                                   <  2:166348/147‑1 (MQ=25)                                                                                                    gATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTTACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGaa                                 <  1:166349/148‑1 (MQ=255)                                                                                                      ttGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAgg                               >  1:166369/1‑148 (MQ=255)                                                                                                            ccGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATc                                                                                                     >  1:166350/1‑72 (MQ=255)                                                                                                            ccGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATc                                                                                                     <  2:166350/72‑1 (MQ=255)                                                                                                            ccGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAAt                                                                                 <  2:166351/92‑1 (MQ=255)                                                                                                            ccGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAAt                                                                                 >  1:166351/1‑92 (MQ=255)                                                                                                            ccGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccacca                                                                 >  1:166377/1‑108 (MQ=255)                                                                                                             cGACTAAAAATCTATCAGGTAACACCCGTATCGGTCGTTAGCTCAGATGGTAGAGCATGTGACTTTAACTCTATTGTGCGCAGGTTCTAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGt                        <  2:166352/148‑1 (MQ=25)                                                                                                              gAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGtt                       >  2:351475/1‑148 (MQ=255)                                                                                                                gTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGc                     >  2:166370/1‑148 (MQ=255)                                                                                                                   aaaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTaaa                                                          >  1:166397/1‑108 (MQ=255)                                                                                                                    aaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAg                                                                                         <  2:166354/76‑1 (MQ=255)                                                                                                                    aaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAg                                                                                         >  1:166354/1‑76 (MQ=255)                                                                                                                    aaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAgaga                                        >  1:166374/1‑125 (MQ=255)                                                                                                                    aaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTa                 >  2:166372/1‑148 (MQ=255)                                                                                                                     aaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAg                <  1:166356/148‑1 (MQ=255)                                                                                                                      aTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTaa                                                                                                       >  2:166355/1‑60 (MQ=255)                                                                                                                      aTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTaa                                                                                                       <  1:166355/60‑1 (MQ=255)                                                                                                                          ttCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTaaa                                                          >  1:166396/1‑101 (MQ=255)                                                                                                                           tCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGaa                                                                                  >  2:166394/1‑76 (MQ=255)                                                                                                                             gggTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGcc        <  1:343212/147‑1 (MQ=255)                                                                                                                                   cacCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTa                                                                                                        >  2:166398/1‑46 (MQ=255)                                                                                                                                   cacCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAgg  >  1:166376/1‑148 (MQ=255)                                                                                                                                            gggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggt                                                       <  1:166361/86‑1 (MQ=38)                                                                                                                                            gggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGtt                                                   <  1:166362/90‑1 (MQ=255)                                                                                                                                            |                                                                                                                                           CATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGG  >  U00096/781230‑781507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.