breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
MC JC 1,397,381 Δ13,756 bp [ynaJ]–[ttcA] 17 genes
MC JC 1,618,499 Δ7 bp coding (404‑410/666 nt) marC ← inner membrane protein MarC
MC JC 1,978,503 Δ776 bp insB5–insA5 insB5, insA5
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 2,713,364 G→A D157N (GAC→AAC)  srmB → ATP‑dependent RNA helicase SrmB
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ U00096 3423698–3424234 3424644–3424238 5–947 143 [141] [141] 144 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? U00096 1207790 =37 (0.140)203 (0.870) 128/260 0.7 82.4% coding (290/630 nt) ycfK protein StfP
?U00096 1209619 = 54 (0.230)intergenic (‑500/‑66) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? U00096 = 120780538 (0.140)171 (0.730) 120/260 1.1 79.6% coding (305/630 nt) ycfK protein StfP
?U00096 = 1209602 54 (0.230)intergenic (‑483/‑83) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? U00096 = 12994980 (0.000)368 (1.440) 207/284 0.0 100% intergenic (+253/‑69) ychE/insH21 MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
?U00096 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein