| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | = 3118881 | 64 (0.730) | 3 (0.040) | 3/272 | 12.4 | 4.8% | coding (232/4563 nt) | yghJ | putative lipoprotein YghJ |
| ? | U00096 | 3118960 = | 59 (0.710) | coding (153/4563 nt) | yghJ | putative lipoprotein YghJ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGGTGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > U00096/3118727‑3118881‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgttggATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAAATTT > U00096/3118960‑3119103 TTACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTG > 2:939278/1‑148TTACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCT < 1:939237/147‑1TTACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTAGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTG < 2:939238/148‑1 TACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGG > 2:939259/1‑148 TACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGG < 2:939239/148‑1 CCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGGTG > 1:939284/1‑148 CCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGATCAGATAACACGTTTTCGTACGAACAGGTTCTGGCTCCGGTTCTGGTG > 1:939271/1‑148 tcgaCACGCAAGTAACGTCCTCGACAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGGTGT < 1:939240/144‑1 CAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCAATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCAGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGGTGTTGG > 1:939282/1‑143 GGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGGTGTTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAA > 2:939292/1‑148 CTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGGTGTTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCAC < 1:939292/148‑1 aggcggaGGCTCCGGTTTTGGTGTTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAA < 2:939285/141‑1 GGTGTTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAA < 1:939299/148‑1 GGTGTTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAA > 2:939335/1‑148 GTGTTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAAA > 2:939332/1‑148 TTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCTTTTTGTATTATTATCGGGTACCACCGAGATCTAAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAAATTT < 2:939300/148‑1 TTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAAATTT > 2:939331/1‑148 TTGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAAATTT > 2:939333/1‑148 TGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGA < 1:939302/129‑1 TGGATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCG < 1:939301/91‑1 TTACCCGCCACGCAAGTAACGTCCTCGCCAGGTTTAAATGTAAAGCCATCGCTGGATTCACCATTACAGGTAGCACCAGTTACCCGCTGGCTTCCGCCCAGGGTCAGATAACCCGTTTTCGTAGGAACAGGTTCTGGCTCCGGTTCTGGTGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > U00096/3118727‑3118881‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgttggATCAGGTTTCACTTCCGGCAAAGACCCTGTTCCAGAATCTACAGGCGGCGTATCGGAGGAAGATCCGGAACCACCGCCATCACAACCGGCTAACAGGGTTGCGCTCAAAATAGCCGCTAAAAGCGATTTCTTATATTTAAATTT > U00096/3118960‑3119103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |