Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AP012306 3,395,364 Δ14 bp intergenic (+61/‑67) trxA → / → rhoL thioredoxin 1/rho operon leader peptide

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AP012306 3395364 3395377 14 363 [0] [0] 361 trxA/rhoL thioredoxin 1/rho operon leader peptide

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP012306 = 33953630 (0.000)360 (1.160) 196/298 0.1 100% intergenic (+60/‑81) trxA/rhoL thioredoxin 1/rho operon leader peptide
?AP012306 3395378 = 0 (0.000)intergenic (+75/‑66) trxA/rhoL thioredoxin 1/rho operon leader peptide

Only 100 of 363 total aligned reads displayed.

CTGTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGCGTACTCTC  >  AP012306/3395214‑3395510
                                                                                                                                                     |                                                                                                                                                   
ctgTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCt                                                                                                                                                     <  1:1627148/150‑1 (MQ=255)
 tGTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTt                                                                                                                                                    <  2:3373422‑M1/150‑2 (MQ=255)
   ttCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttc                                                                                                                                                  <  1:2622926‑M1/150‑4 (MQ=255)
       aaaaCGGTGAAGTGGCGGCAACCAAAGGGGGGGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGGGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtat                                                                                                                                              >  1:3789831‑M1/1‑143 (MQ=255)
        aaaCGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtatt                                                                                                                                             <  1:3366209‑M1/150‑9 (MQ=255)
         aaCGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtatta                                                                                                                                            <  1:1284570‑M1/150‑10 (MQ=255)
          aCGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaa                                                                                                                                           <  2:3738345‑M1/150‑11 (MQ=255)
           cGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaa                                                                                                                                          >  1:1488504‑M1/1‑139 (MQ=255)
           cGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaa                                                                                                                                          <  1:582159‑M1/150‑12 (MQ=255)
             gTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaaca                                                                                                                                        >  1:674267‑M1/1‑137 (MQ=255)
               gAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGGCGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacata                                                                                                                                      >  2:2205740‑M1/1‑135 (MQ=255)
               gAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacata                                                                                                                                      <  1:3317694‑M1/150‑16 (MQ=255)
               gAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacata                                                                                                                                      >  2:1563452‑M1/1‑135 (MQ=255)
                aaGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacatac                                                                                                                                     >  1:934444‑M1/1‑134 (MQ=255)
                  gTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacatacct                                                                                                                                   <  1:512687‑M1/150‑19 (MQ=255)
                  gTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacatacct                                                                                                                                   >  1:2400505‑M1/1‑132 (MQ=255)
                      cggcAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttatt                                                                                                                               <  2:3942728‑M1/150‑23 (MQ=255)
                       ggcAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttatta                                                                                                                              >  2:3289596‑M1/1‑127 (MQ=255)
                       ggcAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttatta                                                                                                                              <  1:2828970‑M1/150‑24 (MQ=255)
                          aaCCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagt                                                                                                                           <  2:2758808‑M1/150‑27 (MQ=255)
                             cAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttg                                                                                                                        <  2:2058063‑M1/150‑30 (MQ=255)
                                aGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaat                                                                                                                     <  1:1040541‑M1/150‑33 (MQ=255)
                                aGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaat                                                                                                                     <  2:1735837‑M1/150‑33 (MQ=255)
                                aGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaat                                                                                                                     <  1:1944365‑M1/150‑33 (MQ=255)
                                  tGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatct                                                                                                                   <  1:3744598‑M1/150‑35 (MQ=255)
                                  tGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAAATGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatct                                                                                                                   >  2:3110000‑M1/1‑116 (MQ=255)
                                   gggTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatctt                                                                                                                  >  2:3540291‑M1/1‑115 (MQ=255)
                                    ggTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttg                                                                                                                 <  2:2562875‑M1/150‑37 (MQ=255)
                                    ggTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttg                                                                                                                 >  2:1353628‑M1/1‑114 (MQ=255)
                                    ggTGCACTGTCTAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgt                                                                                                                <  2:4003631‑M1/150‑38 (MQ=255)
                                     gTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgt                                                                                                                >  1:206123‑M1/1‑113 (MQ=255)
                                       gCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaa                                                                                                              >  1:1389369‑M1/1‑111 (MQ=255)
                                        cACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaat                                                                                                             >  1:291977‑M1/1‑110 (MQ=255)
                                        cACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaat                                                                                                             >  1:4104443‑M1/1‑110 (MQ=255)
                                          cTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaattt                                                                                                           <  1:4201556‑M1/150‑43 (MQ=255)
                                          cTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaattt                                                                                                           <  2:967275‑M1/150‑43 (MQ=255)
                                           tGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttc                                                                                                          <  1:1835027‑M1/150‑44 (MQ=255)
                                           tGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttc                                                                                                          <  1:4012655‑M1/150‑44 (MQ=255)
                                            gTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAGCCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttcc                                                                                                         <  1:3135003‑M1/150‑45 (MQ=255)
                                            gTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttcc                                                                                                         >  2:1686426‑M1/1‑106 (MQ=255)
                                            gTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttcc                                                                                                         >  2:811495‑M1/1‑106 (MQ=255)
                                                 aaGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgc                                                                                                    <  2:1982858‑M1/150‑50 (MQ=255)
                                                  aGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgct                                                                                                   <  2:2890596‑M1/150‑51 (MQ=255)
                                                  aGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgct                                                                                                   >  2:696019‑M1/1‑100 (MQ=255)
                                                       aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccg                                                                                              >  2:3638826‑M1/1‑95 (MQ=255)
                                                       aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccg                                                                                              <  2:3832922‑M1/150‑56 (MQ=255)
                                                        gTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacatacctcattaagtttgaatcttgtaatttccaacgcttcccgt                                                                                             >  1:854770‑M1/1‑94 (MQ=255)
                                                         ttGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgtt                                                                                            >  2:4079200‑M1/1‑93 (MQ=255)
                                                          tGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttt                                                                                           >  2:2674740‑M1/1‑92 (MQ=255)
                                                           gAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgtttt                                                                                          <  2:1209459‑M1/150‑60 (MQ=255)
                                                            aaaGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgtttta                                                                                         <  1:3202954‑M1/150‑61 (MQ=255)
                                                            aaaGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgtttta                                                                                         >  2:2805279‑M1/1‑90 (MQ=255)
                                                               gagTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatct                                                                                      >  1:2338500‑M1/1‑87 (MQ=255)
                                                                agTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTtttgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatctt                                                                                     <  2:3009212‑M1/150‑65 (MQ=255)
                                                                  ttCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaa                                                                                   >  1:3407347‑M1/1‑84 (MQ=255)
                                                                  ttCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaa                                                                                   <  2:2971892‑M1/150‑67 (MQ=255)
                                                                     cTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatg                                                                                <  2:553495‑M1/150‑70 (MQ=255)
                                                                      tCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgc                                                                               <  2:1768252‑M1/150‑71 (MQ=255)
                                                                      tCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgc                                                                               >  1:2194224‑M1/1‑80 (MQ=255)
                                                                       cGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcg                                                                              >  2:2145967‑M1/1‑79 (MQ=255)
                                                                       cGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcg                                                                              >  1:3671296‑M1/1‑79 (MQ=255)
                                                                           gCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagt                                                                          <  1:3700695‑M1/150‑76 (MQ=255)
                                                                            cTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtg                                                                         <  2:1949573‑M1/150‑77 (MQ=255)
                                                                             tAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtga                                                                        <  1:2419196‑M1/150‑78 (MQ=255)
                                                                              aaCCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaa                                                                       <  1:1529210‑M1/150‑79 (MQ=255)
                                                                              aaCCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaa                                                                       <  1:1154544‑M1/150‑79 (MQ=255)
                                                                               aCCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaac                                                                      <  1:1879367‑M1/150‑80 (MQ=255)
                                                                                 cTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacag                                                                    <  1:296105‑M1/150‑82 (MQ=255)
                                                                                 cTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacag                                                                    <  1:1777756‑M1/150‑82 (MQ=255)
                                                                                  tGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacaga                                                                   >  2:2033419‑M1/1‑68 (MQ=255)
                                                                                  tGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacaga                                                                   >  1:2709379‑M1/1‑68 (MQ=255)
                                                                                       tAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttct                                                              <  2:3225087‑M1/150‑88 (MQ=255)
                                                                                        aaGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctg                                                             >  1:733086‑M1/1‑62 (MQ=255)
                                                                                              aTTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgt                                                       >  1:2873936‑M1/1‑56 (MQ=255)
                                                                                               tttCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtc                                                      >  2:880904‑M1/1‑55 (MQ=255)
                                                                                                ttCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtca                                                     >  1:3505263‑M1/1‑54 (MQ=255)
                                                                                                 tCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcac                                                    >  2:1617848‑M1/1‑53 (MQ=255)
                                                                                                  cATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcact                                                   >  2:4226260‑M1/1‑52 (MQ=255)
                                                                                                  cATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcact                                                   >  1:1575942‑M1/1‑52 (MQ=255)
                                                                                                   aTGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactc                                                  >  2:1905730‑M1/1‑51 (MQ=255)
                                                                                                     gTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaa                                                >  2:2579202‑M1/1‑49 (MQ=255)
                                                                                                           gTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtc                                          <  1:3612085‑M1/150‑108 (MQ=255)
                                                                                                            tGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtct                                         <  1:2117919‑M1/150‑109 (MQ=255)
                                                                                                             gCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtctt                                        <  2:1447560‑M1/150‑110 (MQ=255)
                                                                                                             gCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtctt                                        >  1:3288497‑M1/1‑41 (MQ=255)
                                                                                                                     gCTAAAAACTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttc                                <  1:4148471‑M1/150‑118 (MQ=255)
                                                                                                                        aaaaaCTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagt                             >  1:2533517‑M1/1‑30 (MQ=255)
                                                                                                                          aaaCTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttc                           >  2:3452871‑M1/1‑28 (MQ=255)
                                                                                                                           aaCTGGACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttct                          >  1:3979057‑M1/1‑27 (MQ=255)
                                                                                                                                gACGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgta                     <  2:2437629‑M1/150‑129 (MQ=255)
                                                                                                                                 aCGCCCGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtac                    <  1:3917078‑M1/150‑130 (MQ=255)
                                                                                                                                    cccGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactct                 <  2:2344179‑M1/150‑133 (MQ=255)
                                                                                                                                     ccGGCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctc                <  1:1740932‑M1/150‑134 (MQ=255)
                                                                                                                                        gCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctg             <  2:2259055‑M1/150‑137 (MQ=255)
                                                                                                                                        gCGTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctg             >  1:2300347‑M1/1‑14 (MQ=255)
                                                                                                                                          gTGAGTCATGCTttcgtattagacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctgtg           >  2:2518729‑M1/1‑12 (MQ=255)
                                                                                                                                          gTGAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctgtg           >  2:1027877‑M1/1‑12 (MQ=255)
                                                                                                                                            gAGTCATGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctgtgac         <  2:51356‑M1/150‑141 (MQ=255)
                                                                                                                                                 aTGCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctgtgaccaggc    >  2:1395596‑M1/1‑5 (MQ=255)
                                                                                                                                                   gCTttcgtattaaacataccttattaagtttgaatcttgtaatttccaacgcttcccgttttatcttaaatgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctgtgaccaggcag  <  2:356806‑M1/150‑148 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CTGTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGCGTACTCTC  >  AP012306/3395214‑3395510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.