| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | 3045989 = | 484 (1.310) | 8 (0.020) | 7/294 | 22.9 | 1.7% | intergenic (‑412/‑12) | livK/yhhK | leucine transporter subunit/conserved protein |
| ? | AP012306 | 3046004 = | 461 (1.270) | coding (4/384 nt) | yhhK | conserved protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTCGTTAAAACGCGCGGCGTAGATACGGTGGTTATCGTCAACCTGTAACGAGGAAGGGGAATACTCCGGCCAGATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP012306/3046138‑3045989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgAAGCTGACCATCATTCGATTAGAAAAATTTAGCGACCAAGACCGGATTGACCTGCAAAAGATCTGGCCGGAGTATTCCCCTTCCTCGTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTG > AP012306/3046004‑3046151 CTCGTTAAAACGCGCGGCGTAGATACGGTGGTTATCGTCAACCTGTAACGAGGAAGGGGAATACTCCGGCCAGATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTG > 1:4339766/1‑150CTCGTTAAAACGCGCGGCGTAGATACGGTGGTTATCGTCAACCTGTAACGAGGAAGGGGAATACTCCGGCCAGATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTG < 1:4594727/150‑1 TCGTTAAAACGCGCGGCGTAGATACGGTGGTTATCGTCAACCTGTAACGAGGAAGGGGAATACTCCGGCCAGATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTGA > 1:3398708/1‑150 GGTTATCGTCAACCTGTAACGAGGAAGGGGAATACTCCGGCCAGATCTTTTGCAGGTCAATCCGGTCTTGGTCGCGAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTGAAGCTGACCATCATTCGATTAGAAAAATT < 2:3955381/150‑1 GAATACTCCGGCCAGATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTGAAGCTGACCAT > 1:4951896/1‑103 GAATACTCCGGCCAGATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTGAAGCTGACCAT < 2:4951896/103‑1 GATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTGAAGCTGACCATCATTCGATTAGAAAAAT > 1:2911816/1‑106 GATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTGAAGCTGACCATCATTCGATTAGAAAAAT < 2:2911816/106‑1 TTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTGAAGCTGACCATCATTCGATTAGAAAAATTTAGCGACCAAGACCGGATTGACCTGCAAAAGATCTGGCCGGAGTATTCC < 2:3398708/150‑1 CCCTTGAAGCTCACCATCATTCGATTAGAAAAATTTACCGACAAAGACCGGATTGACCTCAAAAAGATCTGGCCGGAGTATTCCCCTCCCTCGTTACAGGTTGACAAAAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTC < 2:1087433/150‑1 TGAAGCTGACCATCATTCGATTAGAAAAATTTAGCGACCAAGACCGGATTGACCTGCAAAAGATCTGGCCGGAGTATTCCCCTTCCTCGTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTG < 1:269397/150‑1 TGAAGCTGACCATCATTCGATTAGAAAAATTTAGCGACCAAGACCGGATTGACCTGCAAAAGATCTGGCCGGAGTATTCCCCTTCCTCGTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTG < 1:4784484/150‑1 TGAAGCTGAAAATCATTCGATTAGAAAAATTTAGCGACCAAGACCGGATTGACCTGCAAAAGATCTGGCCGCAGTATTCCCCTTCCTCGTTACAGGTTGACGATAACCCCCGTATCTAAGCCGCGCGTTTTAACGAGCGCCTGCTCGCTG < 2:2637659/150‑1 CTCGTTAAAACGCGCGGCGTAGATACGGTGGTTATCGTCAACCTGTAACGAGGAAGGGGAATACTCCGGCCAGATCTTTTGCAGGTCAATCCGGTCTTGGTCGCTAAATTTTTCTAATCGAATGATGGTCAGCTTCATGGGTAACCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP012306/3046138‑3045989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgAAGCTGACCATCATTCGATTAGAAAAATTTAGCGACCAAGACCGGATTGACCTGCAAAAGATCTGGCCGGAGTATTCCCCTTCCTCGTTACAGGTTGACGATAACCACCGTATCTACGCCGCGCGTTTTAACGAGCGCCTGCTCGCTG > AP012306/3046004‑3046151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |