| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 1508931 = | 181 (0.960) | 3 (0.020) | 3/122 | 13.5 | 2.2% | coding (757/846 nt) | nhoA | N‑hydroxyarylamine O‑acetyltransferase |
| ? | NC_012967 | = 4092038 | 116 (0.720) | coding (242/441 nt) | yiiR | DUF805 domain‑containing protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 134 total aligned reads displayed.
AACAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGCGTTTTG > NC_012967/4091967‑4092109 | aaCAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATNGGCATTTCTGATGATtgt > 1:2561534/1‑72 (MQ=255)aaCAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATtgt > 1:4334097/1‑72 (MQ=255)aaCAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATtgt > 2:2017360/1‑72 (MQ=255)aaCAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATtgt < 1:6539756/72‑1 (MQ=255)aaCAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGCGCATTTCTGATGATtgt > 1:3036035/1‑72 (MQ=255) aCAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATtgtg > 1:3440583/1‑72 (MQ=255) aCAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATtgtg < 1:3633450/72‑1 (MQ=255) aGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGc < 2:2084545/72‑1 (MQ=255) gCGGCAGTAACCGTTAGGCGCTTGCATGCTCGCGGGCGTTCCGTCGCATGGGCATTTCTGATGATTGTGGCg < 2:2591792/72‑1 (MQ=255) gCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTgg < 1:235297/72‑1 (MQ=255) cAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGa > 1:616726/1‑72 (MQ=255) aGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAt > 2:446704/1‑72 (MQ=255) aGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAt > 2:3577633/1‑72 (MQ=255) tAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑c < 1:5965416/72‑1 (MQ=255) aaCCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑ct < 1:1550677/72‑1 (MQ=255) aaCCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑ct > 2:4549071/1‑72 (MQ=255) aaCCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑ct < 1:5905372/72‑1 (MQ=255) aaCCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑cg < 1:2805069/72‑2 (MQ=255) aaCCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑cc > 1:1472240/1‑71 (MQ=255) aCCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑ctg < 1:3633237/72‑1 (MQ=255) aCCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑ctg > 1:4079180/1‑72 (MQ=255) aCCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGAtg‑ctg > 1:998187/1‑72 (MQ=255) cGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATg‑ctgct < 2:1644078/72‑1 (MQ=255) cGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATg‑ctgct > 1:1248419/1‑72 (MQ=255) tAAGCNCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGc < 2:295810/72‑1 (MQ=255) tAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGTCGTGGATG‑CTGCTGGc > 1:165123/1‑72 (MQ=255) tAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGc < 2:3876011/72‑1 (MQ=255) tAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGc < 2:6356253/72‑1 (MQ=255) aaGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCg < 2:6104110/72‑1 (MQ=255) aaGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCg < 1:4785244/72‑1 (MQ=255) gcTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCgggga > 2:6639416/1‑70 (MQ=255) cTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATtgt < 2:3601826/48‑1 (MQ=255) cTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGGaa > 1:110595/1‑72 (MQ=255) ttGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAAc < 1:6616210/72‑1 (MQ=255) ttGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAAc < 1:3231137/72‑1 (MQ=255) tGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACt > 1:6266012/1‑72 (MQ=255) tGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACt < 1:3226819/72‑1 (MQ=255) gCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTg < 1:1656875/72‑1 (MQ=255) cttGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTgg < 1:4848150/70‑1 (MQ=255) cATGGTCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTgg < 2:1750435/72‑1 (MQ=255) cATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTgg > 1:2036232/1‑72 (MQ=255) cATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTgg < 1:2804638/72‑1 (MQ=255) cATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGCGACTgg > 1:6235975/1‑72 (MQ=255) aTGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTggg < 2:2149389/72‑1 (MQ=255) aTGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTggg < 1:6214109/72‑1 (MQ=255) tGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGc < 1:2282506/72‑1 (MQ=255) aTCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATN‑CTGCTGGCGGGTAACCGGGGGa > 1:1839747/1‑72 (MQ=255) aTCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCgg > 1:5931449/1‑71 (MQ=255) aTCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGa < 1:3879928/72‑1 (MQ=255) tCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGAt > 1:4320533/1‑72 (MQ=255) cgcgGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGAtt < 1:4804197/72‑1 (MQ=255) cgcgGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGAtt < 2:5445904/72‑1 (MQ=255) cgcgGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGGAACTGGGGGAtt > 2:5477625/1‑72 (MQ=255) gcgGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGGGGttt > 2:5733517/1‑72 (MQ=255) gcgGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGAGGAGG‑CTGCTGGCGGGGAACGTGGTGAttt > 1:3716500/1‑72 (MQ=255) gggCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGNCGGGTAACTGGGCGATTTTa > 1:2511199/1‑72 (MQ=255) gggCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTa > 2:3732625/1‑72 (MQ=255) gggCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTa < 2:1324363/72‑1 (MQ=255) gCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTAcc < 1:2867710/72‑1 (MQ=255) gCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTAcc > 1:4531780/1‑72 (MQ=255) gCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTAcc > 1:5162797/1‑72 (MQ=255) cGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTGACTGGGGGATTTTACCg > 1:144492/1‑72 (MQ=255) cGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCg < 1:5987704/72‑1 (MQ=255) cGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCg < 1:1594814/72‑1 (MQ=255) tCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCgggg > 1:1597778/1‑71 (MQ=255) tCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGgt < 2:3207732/72‑1 (MQ=255) tCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGgt < 2:5010548/72‑1 (MQ=255) tcGGCGCATTGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGgtg < 2:2298112/71‑1 (MQ=255) ccGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGgtg > 1:2993957/1‑72 (MQ=255) cGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGgtgt > 2:4096949/1‑72 (MQ=255) cGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGgtgt > 2:3066240/1‑72 (MQ=255) cGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGGTACTTGGGGGTTTTTCCCGgtgt > 2:2380165/1‑72 (MQ=255) ggCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGAATTTTGCGGgtgtt > 2:1034698/1‑71 (MQ=255) ggCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTACTGGCGGGTAACTGGGCGATTTTACCGGGTGTc > 2:3880902/1‑72 (MQ=255) cgcATGGGCATTTCTAATGATTGTTGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTg < 2:5296384/72‑1 (MQ=255) gcATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTgg > 1:5591497/1‑72 (MQ=255) gcATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTgg < 2:6383293/72‑1 (MQ=255) cATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGc > 1:6016802/1‑72 (MQ=255) aTGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGGCTTTTCCGGGTGTGTGGCa > 1:2400905/1‑72 (MQ=255) aTGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCa > 1:6098337/1‑72 (MQ=255) aTGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCa < 1:3102278/72‑1 (MQ=255) aTGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCa < 1:5174091/72‑1 (MQ=255) tGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCaa < 2:4697978/72‑1 (MQ=255) gCATTTCTGATGATTGAGGGGTGGATG‑CTGCTGGCAGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATgg < 2:3025602/72‑1 (MQ=255) atgtCTGATGATTGTGGCGTGGAGG‑CTGCTGTCGGCTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGc < 2:6612353/69‑1 (MQ=255) aTTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGc < 2:5721948/72‑1 (MQ=255) aTTTCTGAAGATTGTTGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGc < 2:1879229/72‑1 (MQ=255) cTGATGATTGTGGCGTGGGTGCCTCCGGGGGGGTAAC‑GGGGGGTTTTTCCGGGGGGCTGGGCATgggggggg > 2:4220136/1‑70 (MQ=255) gatgatTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCgggggg > 1:183674/1‑72 (MQ=255) gatgatTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAAGGGGCGGTggg < 2:438655/72‑1 (MQ=255) atgatTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTgggg < 2:1163507/72‑1 (MQ=255) tgatTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGc < 2:6025985/72‑1 (MQ=255) tgatTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGc < 1:861846/72‑1 (MQ=255) gatTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGCg < 1:101663/72‑1 (MQ=255) atTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTTCCGGGTGTCTGGCAATGGGCGGTggggggg > 2:2571752/1‑69 (MQ=255) atTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGGGt > 2:4002179/1‑72 (MQ=255) ttGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGCGtt < 1:5340154/72‑1 (MQ=255) tgtgGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGCGttt > 1:3879537/1‑72 (MQ=255) tgGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGCGTTTTg < 2:5417590/72‑1 (MQ=255) tgGCGTGGACG‑CTGCTGGCGGGTAACTGGGCGATGTTACCGGGTGTCTGGCAATGGGCGGTGGGGCGTTTTg < 2:1658593/72‑1 (MQ=255) | AACAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATG‑CTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGCGTTTTG > NC_012967/4091967‑4092109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |