| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 107 (0.490) | 5 (0.030) | 5/114 | 13.2 | 5.0% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 106 (0.600) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/880612‑880528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgggttttttgttGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < NC_012967/904682‑904612 CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA > 2:2782115/1‑72CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAA > 1:5325844/1‑72 ACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATG > 2:6927137/1‑72 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGG > 1:1276665/1‑72 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGG < 2:7282937/72‑1 CCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGG > 1:1716134/1‑72 CACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGG < 1:2771414/72‑1 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGT > 1:2021621/1‑72 ACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGT < 2:6102666/72‑1 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT > 1:1207342/1‑72 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT < 1:4643196/72‑1 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT > 1:3535272/1‑72 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTT < 1:3076432/72‑1 TGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTATTTTCATTAACCCGTTTACATAAATGGGTTT > 1:241143/1‑72 TGACCACCAACCCAACTTATTGTTTTTACTANAACTTANTGTTTTCATTAACCCGTTTACATAAATGGGTTT > 1:445730/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT > 1:3080440/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT > 1:7245198/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT > 1:5219901/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT > 1:5634231/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT > 1:926397/1‑72 GACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTT > 1:4362872/1‑72 CCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT > 2:4631022/1‑72 CCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTT > 2:4631032/1‑72 CACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTG < 1:434367/72‑1 ACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGT < 2:5870647/72‑1 ACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGT > 1:3385392/1‑72 CCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT > 2:6086917/1‑72 CCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT > 2:3743544/1‑72 TAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAAT < 2:5561048/72‑1 ATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGAT < 1:4212522/72‑1 TGTTTTCATTACCCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTTTTTAAAATCATGATGT < 1:4358686/72‑1 ACCCGTTTACATAAATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTG > 2:3954526/1‑72 CGTTTACATAAATGGGTTTTTTGTTGCCTGAAATCTATGCTCTTTAAAATCATNATGTTAGAAGCAATGTTT > 2:616768/1‑72 ATGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGG > 2:6024522/1‑72 TGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGC < 2:7592031/72‑1 TGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGC > 1:4661126/1‑72 TGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGC < 1:3664260/72‑1 TGGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGC < 1:1339202/72‑1 GGGTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCG < 1:2085048/72‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAANCACTGTTTTTTAACGATGGCGAC < 1:4955697/72‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC < 1:6775178/72‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC < 2:5118642/72‑1 GTTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGAC > 1:2666471/1‑72 TTTTTTGTTGCCTGAAATTTATGCTCTTTAACATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA > 2:1749692/1‑72 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA > 2:5428143/1‑72 TTTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACA < 1:4338481/72‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 2:6228204/72‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 2:2225338/72‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA > 2:1712031/1‑72 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA > 2:3198196/1‑72 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA < 2:3264442/72‑1 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA > 2:6708027/1‑72 TTTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAA > 2:5902449/1‑72 TTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAA < 2:901818/72‑1 TTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAA > 1:3602036/1‑72 TTTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAA < 1:3087009/72‑1 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA < 2:5441534/72‑1 TTTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAA < 1:7025685/72‑1 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT > 1:6875563/1‑72 TTGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAAT < 1:2941168/72‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 2:5081078/1‑72 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 1:7116773/72‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 2:760689/1‑72 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG > 1:5575290/1‑72 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 1:7567388/72‑1 TGTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATG < 1:3237283/72‑1 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG < 1:4548075/72‑1 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG < 1:4464539/72‑1 GTTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGG > 2:1174595/1‑72 TTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC > 2:7300344/1‑72 TTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC > 1:2114914/1‑72 TTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC > 1:199974/1‑72 TTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC > 1:466708/1‑72 TTGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGC > 2:4889347/1‑72 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGANNCACTGTTTTTTAACGATGGCGACAAAATGGCG < 1:5327056/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 2:5451191/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 1:2870090/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 1:6956255/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG > 1:2047778/1‑72 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 1:7542866/72‑1 TGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < 2:1701506/72‑1 CCACCACTGACCACCAACCCAACTTATTGTTTTTACTATAACTTATTGTTTTCATTAACCCGTTTACATAAATGGGTTTTTTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/880612‑880528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgggttttttgttGCCTGAAATTTATGCTCTTTAAAATCATGATGTTAGAAGCACTGTTTTTTAACGATGGCGACAAAATGGCG < NC_012967/904682‑904612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |