| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 107 (0.490) | 5 (0.030) | 5/114 | 13.2 | 5.0% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 106 (0.600) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 158 total aligned reads displayed.
CCGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGA > NC_012967/904611‑904753 | ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc > 2:3105910/1‑72 (MQ=255)ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc < 1:4491343/72‑1 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 2:1701506/1‑72 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 1:7542866/1‑72 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 2:5451191/1‑72 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 1:199974/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 1:466708/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 1:2114914/72‑1 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca > 1:7567388/1‑72 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 2:5081078/72‑1 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 1:5575290/72‑1 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca < 2:760689/72‑1 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa > 1:2941168/1‑72 (MQ=255) ttttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaa > 1:7025685/1‑72 (MQ=255) tttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa < 1:3602036/72‑1 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa > 2:3264442/1‑72 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa < 2:6708027/72‑1 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa > 2:6228204/1‑72 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa < 2:5902449/72‑1 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa > 2:2225338/1‑72 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa < 2:1712031/72‑1 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa < 2:5428143/72‑1 (MQ=255) gTCGCCATCGTTAAAAAACAGTGNTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c > 1:4955697/1‑72 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c > 1:6775178/1‑72 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑c < 1:2666471/72‑1 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑a > 1:1339202/1‑72 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑At < 2:6024522/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATc < 2:5824843/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATc < 2:7390203/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATc > 1:3755334/1‑72 (MQ=255) aTCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCa < 1:957060/72‑1 (MQ=255) aTCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCa > 1:3604892/1‑72 (MQ=255) aTCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCa > 1:3448784/1‑72 (MQ=255) aTCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCa < 2:3805978/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAAc > 1:6887507/1‑72 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAAcc < 1:1271541/72‑1 (MQ=255) ttAAANAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCt < 2:2953677/72‑1 (MQ=255) ttAAANAACAGTGCTGCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCt < 2:2953656/72‑1 (MQ=255) tAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCtt < 1:460138/72‑1 (MQ=255) tAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTAAGGCAACAAAAAA‑CCC‑ATCAAccat < 1:6890954/72‑3 (MQ=255) aaaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTg > 2:7630145/1‑72 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAGCAAAAAA‑CCC‑ATCAACCTTG‑a < 1:4456243/72‑1 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑a > 2:7014451/1‑72 (MQ=255) aaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTGCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑aa < 1:6528521/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AAc < 1:6066919/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AAc > 1:7077676/1‑72 (MQ=255) aaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AAcc > 1:7589455/1‑72 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCg < 1:3355315/72‑1 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCg < 2:6123346/72‑1 (MQ=255) cAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AAccca > 1:47664/1‑70 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑CTCAACCCTG‑AACCGaa > 2:4918346/1‑72 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGaa > 1:2067885/1‑72 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGaa < 1:7625687/72‑1 (MQ=255) aGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTAAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGaa < 1:5617995/72‑1 (MQ=255) tGCTTNTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAAt < 2:347085/72‑1 (MQ=255) tGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAAt < 1:2598824/72‑1 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATg < 1:1833788/72‑1 (MQ=255) cTTCTNACATCATGATTTTAAAGAGCNTAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATgg < 2:859010/72‑1 (MQ=255) ttCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGc > 2:6249999/1‑72 (MQ=255) cTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑gg < 1:3196953/72‑1 (MQ=255) cTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑gg < 2:6378234/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑ggg < 1:3013032/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑ggg > 1:4260035/1‑72 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑gggg < 1:668095/72‑1 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTT‑AACCGAAAAGGC‑ggggg > 1:4836248/1‑71 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGt < 1:4042674/72‑1 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AAACGGAATGgg‑ggggg > 1:4250407/1‑71 (MQ=255) aCATCATGATTTTAAAGAGAATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGt < 2:4882121/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑gggggt > 2:3341670/1‑70 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCC‑CCCAACCTTT‑AACCCAAAAGgg‑gggggg > 1:560480/1‑70 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTg > 2:1475072/1‑72 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGGTg > 2:3355652/1‑72 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑AACAACCTTG‑AACCGAAATGGC‑GGGGGTg > 2:494773/1‑72 (MQ=255) tcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGa < 1:4379196/72‑1 (MQ=255) catGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGAt < 2:3274490/72‑1 (MQ=255) catGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGGTgtt > 1:6256237/1‑70 (MQ=255) atGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGATg < 1:7484022/72‑1 (MQ=255) atGATTTTAAAGAGCATAAATTGCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGATg < 2:4372500/72‑1 (MQ=255) tGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAG‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGGtggtgg > 1:6112216/1‑72 (MQ=255) gATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGGTTATggg > 1:2020006/1‑72 (MQ=255) aTTTAAAAGAGCATAATTTTCAGAAAAAAAAAAC‑CCC‑ATCAACCTTG‑ACCCGAAAGGGC‑GGGGTTGATGGGc < 2:6651539/72‑1 (MQ=255) ttttAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGCGGGGGTTGTTGGGc > 2:3947025/1‑72 (MQ=255) ttttAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAAGGGC‑GGGGTTGATGGGCt < 1:6040756/72‑1 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGGTGATtggggc > 1:5965342/1‑69 (MQ=255) tAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AAACGAAATGGC‑GGGGGTGGTGGGGTccc > 2:6868791/1‑71 (MQ=255) aaaGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑CTCCACCTTG‑AACCGAAATGGC‑GGGGGTGGTGGGGCCcac > 2:5195526/1‑72 (MQ=255) aaGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGATGGGCTCcaca > 1:7207859/1‑72 (MQ=255) aaGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGATGGGCTCcaca < 2:5777163/72‑1 (MQ=255) gagCATAAATTACAGGAAAAAAAACA‑CCC‑ATCAACCTGG‑AACGGAAGGGGG‑GGGGTTGAGGGGCTCCACaaa < 1:2381448/72‑1 (MQ=255) aTAAATTTCAGGCAACAAAAAA‑CCC‑CTCAACCCTG‑AACCGAAATGGCGGGGGTGGATGGGCCCCCAaaaaag > 2:6490506/1‑70 (MQ=255) tAAATTTCAGGCAACAAAAAA‑CCC‑CTCAAACCTT‑AAACGAAAAGGC‑GGGGGTGTTGGGGGCCACAAAAAggc > 2:2718384/1‑71 (MQ=255) tAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGATGGGCTCCACCAAATggg > 2:7480115/1‑72 (MQ=255) aattCAAGGAAAAAAAAA‑CCCAATCACCCTTG‑AACCGAAATGGC‑GGGGTTGATGGGCTCCACAAAATGGGGa < 2:6759045/70‑1 (MQ=255) acAGCCAACAAAAAC‑CCC‑ACCACCCGAA‑AACCGAAATGGC‑GGGTTTGTGGGGCTCCACAAAATGGGGACATc < 1:5436938/71‑1 (MQ=255) cacgCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATTGC‑GGGGTTGATGGGCTCCACAAAATTGGGACATCa < 2:5561182/69‑1 (MQ=255) aGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGGTGGTGGGGGCCCCAAAAAGGGGGCATCaa > 1:5303698/1‑72 (MQ=255) gCAACAAAAAA‑CCC‑ACCACGCATG‑AACCGAAAGGGC‑GGGGTTGATGGGCTCCACAAAATGGGGACATCAAAg < 2:7242138/72‑1 (MQ=255) acaaaaaAAAA‑CCC‑ATAACCCTGG‑AACCGAAATGGC‑GGGGTTGAGGGGCTCCACAAAATGGGGACATCAAAg < 1:1719284/71‑1 (MQ=255) acaaaaaAAAA‑CCC‑AAAAACCCGGAAACAGAAGGGGG‑GGGGTTGTGGGGCTCCACAAAATGGGGACATCaaa < 1:4643590/71‑1 (MQ=255) caacaaAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGATGGGGTCCACAAAATGGGGACATCAAAGa > 1:368482/1‑72 (MQ=255) | CCGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAA‑CCC‑ATCAACCTTG‑AACCGAAATGGC‑GGGGTTGATGGGCTCCACAAAATGGGGACATCAAAGA > NC_012967/904611‑904753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |