New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 2066637 =158 (0.720)33 (0.180)
+GTTGGCGCACAAT		 12/116 10.1 17.9% intergenic (‑34/+59) wcaA/wzc colanic acid biosynthesis glycosyltransferase WcaA/tyrosine‑protein kinase Wzc
?NC_012967 2783338 = 213 (0.970)intergenic (+67/+81) ygcP/ygcQ glycerol‑3‑phosphate responsive antiterminator/electron transfer flavoprotein subunit alpha/FixB family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/2066678‑2066637
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGT  >  NC_012967/2783338‑2783378
                                          |||||||||||||                                         
CCGACCCGTGGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTG                          <  1:3730685/72‑1
     CCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCG                     >  2:3850797/1‑72
     CCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCG                     >  2:3484000/1‑72
     CCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCCTGACGCG                     >  1:2214369/1‑72
     CCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGAT                                    >  2:2384005/1‑57
      CGTAGGCCGGATAAGGCGTTCACNCCGCATCCGGCAGTTGGCGCACAATGCCCCATGCGACGCCTTACGCGg                    >  1:4938483/1‑71
      CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGT                    >  1:6330103/1‑72
       GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACACTGCATGATGCGACGCTTGACGCG                     >  2:5867571/1‑70
       GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTTGCGCGTC                   >  2:7685289/1‑72
       GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAAGCTTGAAGCGTg                   >  1:4879627/1‑71
       GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCATGATGCGACGCTTGACGCG                     <  1:5867572/70‑1
         AGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTT                 >  2:3564645/1‑72
           cgCGGAAAAGGCGTTCCCGCCGCATCGGGCAGTTGGCGCACAATGCCTTATGCGACGCTTGACGCGTCTTAT               <  1:2155992/70‑1
           GCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTAT               <  2:3891628/72‑1
             CGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCC                                        >  1:1005041/1‑45
              GGATAAGGAGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGATTGACGCGTCTTATCAa            >  2:6378097/1‑71
                 tagGGCGTTGCCGCCGCATCCGGCAGTTGGCGCAAAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCC         <  2:1614696/69‑1
                  AAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCT        >  1:5882692/1‑72
                  AAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAAGCCT        >  2:3374919/1‑72
                  AAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTC                   <  1:5148624/61‑1
                  AAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTC                   >  2:5148623/1‑61
                  AAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCT                            >  2:637763/1‑52
                    GGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTAT               >  2:2320658/1‑63
                    GGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTAT               <  1:2320658/63‑1
                     GCGTTCCCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACA     <  2:5797708/72‑1
                      CGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCT                  >  1:4329287/1‑58
                      CGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCT                  <  2:4329286/58‑1
                      CGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAC                               >  2:2046551/1‑45
                        TTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTG                                      >  1:3322723/1‑36
                         TCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAC                               >  1:5761117/1‑42
                                GCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCT        <  2:7378868/58‑1
                                    CCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTA                <  1:34424/46‑1
                                     CGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGT  <  2:6000910/59‑1
                                                 CACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGT  <  1:1202248/47‑1
                                          |||||||||||||                                         
CCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_012967/2066678‑2066637
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGT  >  NC_012967/2783338‑2783378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.