| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 4005890 = | 164 (0.750) | 52 (0.310) +ACCGGCTTGGGCGTTA |
6/110 | 12.4 | 32.4% | intergenic (+191/+92) | fre/fadA | NAD(P)H‑flavin reductase/acetyl‑CoA C‑acyltransferase FadA |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/4005927‑4005890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGTCGGATGCGGCGTAAACGCCTTATCCGACCTA < NC_012967/4275216‑4275181 |||||||||||||||| TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTCGATGTCGGATGCGGCGTA > 1:2557218/1‑72TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 1:4931009/1‑72TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 1:7009774/1‑72TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 1:2830362/1‑72TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 2:3794185/1‑72 GTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGCTGTCGGATTCGGCGTAA > 1:3802897/1‑72 GTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGGGTAA > 1:2208381/1‑72 GTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA < 1:1971864/72‑1 AGGCCTGATAAGACGCGCCAGCGTCACATCAGGCAACCGGCTTGGGCGTCAGATGTCGGTGGCGGTGTAAAC > 1:4070315/1‑72 GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGGGGAAACGC > 1:1374083/1‑72 TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG < 1:7687912/35‑1 TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG > 2:7687911/1‑35 ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGAAGCGGCGTAAACGCCTTAT > 2:6144804/1‑72 ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCG < 1:2299688/41‑1 ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCG > 2:2299688/1‑41 ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG > 1:7016333/1‑38 TAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAAACGCCTTATC > 2:1397465/1‑72 AAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGA > 2:6870281/1‑51 AAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGA < 1:6870282/51‑1 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGGTGCGGGGTAAACGCCCTTTCCGA > 2:1461561/1‑72 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA < 1:2307271/59‑1 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA > 2:2307271/1‑59 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTC < 1:1998349/46‑1 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTC > 2:1998349/1‑46 ACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCG < 1:6082411/46‑1 ACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCG > 2:6082410/1‑46 CGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGGTGCCGCGGAAACCCCCTATCCCACC > 1:3840452/1‑72 CGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTC > 2:3251787/1‑44 CGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTC < 1:3251787/44‑1 GCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGAT < 1:3853835/47‑1 GCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGAT > 2:3853834/1‑47 CGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGAGGTCGGATGCGGCGTAGACGCCTTATCCAACCca > 1:6429935/1‑70 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 1:4648509/48‑1 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG > 2:4648508/1‑48 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGC > 2:107285/1‑47 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGC < 1:107285/47‑1 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAG < 2:5406571/36‑1 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAG > 1:5406572/1‑36 CAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG > 1:7415219/1‑46 CAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 2:7415218/46‑1 CAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGA > 1:3732206/1‑42 GTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA < 2:1824431/47‑1 GTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 1:1824431/1‑47 GCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 1:1172038/1‑44 GCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA < 2:1172038/44‑1 CATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCG < 2:3442975/41‑1 CATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCG > 2:4861809/1‑41 CATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCG > 1:3442975/1‑41 CATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCG < 1:4861810/41‑1 ATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 2:557478/37‑1 CAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 2:3155965/35‑1 CAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG > 1:3155965/1‑35 CAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 1:4833916/35‑1 AGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA < 1:6286313/39‑1 AGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 2:6286312/1‑39 CAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA < 2:4970491/37‑1 CAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA > 1:4970492/1‑37 |||||||||||||||| TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/4005927‑4005890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGTCGGATGCGGCGTAAACGCCTTATCCGACCTA < NC_012967/4275216‑4275181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |