| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 4005890 = | 164 (0.750) | 52 (0.310) +ACCGGCTTGGGCGTTA |
6/110 | 12.4 | 32.4% | intergenic (+191/+92) | fre/fadA | NAD(P)H‑flavin reductase/acetyl‑CoA C‑acyltransferase FadA |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 167 total aligned reads displayed.
TCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAGGCGTTC > NC_012967/4005819‑4005961 | tCGTGCCTACAAATAGTCCGAACCGTAGGCGGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGAt < 1:4027621/72‑1 (MQ=255) cGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATg > 1:3123585/1‑72 (MQ=255) gTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGc > 1:7676726/1‑72 (MQ=255) gCCTACAAATAGTCCGAACCGTAGGCCGGGAAAGGCGTTTTCGCCGCCTCCGGCGAATTGG‑GGACGATggcc > 2:2660/1‑69 (MQ=12) ccTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGAAGGCTg > 1:3462187/1‑72 (MQ=255) cTACAAATAGTCCGAACAGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGa > 2:4341840/1‑72 (MQ=255) tACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGGC‑AATTGGTGCACGATGCCTGAt > 2:6126171/1‑72 (MQ=255) tACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCCGAt > 1:7685192/1‑72 (MQ=255) cAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGc < 2:453275/72‑1 (MQ=255) cAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGc < 2:6530696/72‑1 (MQ=255) aaTAGTCCGAACCGTAGGCCGGATAAGTCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGa < 2:1418710/72‑1 (MQ=255) aaTAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGa < 2:7525516/72‑1 (MQ=255) aTAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑CATTGGTGCCCGATGCCTGATGCGAc > 2:2305577/1‑72 (MQ=255) aTAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCCGATGCGag > 2:4357302/1‑71 (MQ=255) tAGTCCAAACGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACg < 2:3639079/72‑1 (MQ=255) aGTCCAAACCGTGGGCCGGATAAGGGGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGc < 1:1235337/72‑1 (MQ=17) ccGACCCGTAGGCGGGATAAGGGGTTTACGCCGCATCCGGC‑AATTGTTGCACGATGCCTGATGCGACGCTgg < 1:1981005/72‑1 (MQ=17) ccGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGAAGCCACGCCgg > 1:2371393/1‑72 (MQ=17) ccGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGAAGCCTGATGCGACGCCgg > 2:4207279/1‑72 (MQ=255) cGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGgc < 1:5527737/72‑1 (MQ=255) cGAACCGGAGGCAGGATAAGGCGTTTACGCGGCTTCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGgc < 2:3614152/72‑1 (MQ=17) gAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGCCACTGgcg > 2:5400173/1‑72 (MQ=255) agccGTAGGCGGGATAAGGCTTTTACGCCGCACCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGgcgc < 1:6084482/70‑1 (MQ=14) aaCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGgcgc < 1:6212535/72‑1 (MQ=255) aCCGTAGGCGGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGcgcg < 1:1715404/72‑1 (MQ=255) aCCGTAGGCCGGGAAAAGCGGTTACGCCGCCTCCCGC‑AATTGGTGCACGATGCCTGATGCGGCGCCGgcggc > 2:7151100/1‑70 (MQ=14) tAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCtt > 1:7339494/1‑72 (MQ=255) aGGCGGGATAGGGGTTTTCCGCCGCACCGGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTa < 1:2599394/72‑1 (MQ=14) aGGCCTGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATCCCTGATGCGACGCTGGCGCGTCTTa > 2:7713979/1‑72 (MQ=255) ggCGGGATAGGGGGTTAACGCCGCGCCGGGC‑AATTGGTGCACGGTGCATGATGCGACGCTGGCGCGTCTTAt < 2:106362/72‑1 (MQ=9) ggCGGGAAAGGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTAt < 2:2003477/72‑1 (MQ=14) gCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATc < 1:7362563/72‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATAAg > 1:6538438/1‑72 (MQ=255) ggATGAGGGCTTTACNACNCATCCGGG‑AATTGTTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 2:5481831/72‑1 (MQ=17) ggATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAgg > 2:6782357/1‑72 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAgg > 2:7670486/1‑72 (MQ=255) gATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc > 1:6965383/1‑72 (MQ=255) aTAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGGTGGCGGGTCGTATCAGGca > 2:6332631/1‑71 (MQ=17) aTAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGcc > 2:3499570/1‑72 (MQ=255) aTAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCCGANGCCACGCTGGCGCGGCTTTTCCGGcc > 1:522175/1‑72 (MQ=17) tAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGccc > 1:1360022/1‑71 (MQ=255) tAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt < 1:5494854/72‑1 (MQ=255) aaGGCGTTTACGCCGCATCGGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa < 2:4028822/72‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa > 2:6857541/1‑72 (MQ=255) aaGGCGTTTACGCCGCACCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa < 1:1821558/72‑1 (MQ=255) aaGCCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTa < 2:7450243/72‑1 (MQ=255) gggCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTNTTATCAGGCCTA‑c < 1:2463677/71‑1 (MQ=255) aGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCCTATCAGGCCTA‑c > 1:5562730/1‑72 (MQ=255) ggCTTTCACGCGGCACCGGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑Ca < 1:4364365/72‑1 (MQ=14) ggCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑Ca > 1:6243866/1‑72 (MQ=255) ggCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑Ca > 2:6415066/1‑72 (MQ=255) ggCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCCGATTCGACGCCGGCGCGGCTTTTCAGGCCTA‑Ca > 2:6722470/1‑72 (MQ=17) gCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGTCCTA‑CAt > 1:1310105/1‑72 (MQ=255) gTTTACGCCGCATCCGGC‑CATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTg > 2:7432622/1‑72 (MQ=255) gTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTg > 2:3372865/1‑72 (MQ=255) tttACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTgg < 1:3687185/72‑1 (MQ=255) ttACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGt > 2:6077393/1‑72 (MQ=255) ttACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGt < 1:6875887/72‑1 (MQ=255) tACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTg < 2:125550/72‑1 (MQ=255) tACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CAATGGTg > 1:6569356/1‑72 (MQ=255) aCGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGc > 2:3673003/1‑72 (MQ=255) cgccgcATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGcc > 1:4228345/1‑72 (MQ=255) cgccgcATCCGGC‑AATTGGTGCACGATGCCCGATGCGACGCTGGCGCGTCTTATCAGGACTA‑CATTGGTGcc > 1:3228217/1‑72 (MQ=18) gccgcATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGGCTTATCCGGCCTA‑CCTTGGTGGCg > 2:7248586/1‑72 (MQ=17) ccgcATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCgg > 1:6309894/1‑72 (MQ=255) ccgcATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCgg > 1:4063988/1‑72 (MQ=255) ccgcATCCGGC‑AATTGGTGCACGATGCCCGATGCGACCCTGGCGCGGCTTTTCAGGCCCACCATTGTTGcgg > 1:1460775/1‑70 (MQ=14) cgcATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCCTATCAGGCCCA‑CATTGGTGCCGGa > 2:2018832/1‑72 (MQ=255) gcATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTTTCAGGGCTA‑CCTTTGTGCCggga > 1:2170118/1‑70 (MQ=17) gcATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGAt > 2:122242/1‑72 (MQ=255) cgtCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATc < 1:2091069/70‑1 (MQ=255) cATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATc < 1:6118395/72‑1 (MQ=255) cATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATc < 2:5900712/72‑1 (MQ=255) aTCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCt > 1:7290243/1‑72 (MQ=255) aTCCGGC‑AATTGGTGCACGATGCCTGATGCCACGCTGGCGCGTCCTATCAGGCCCG‑CACTGGGGCCGGAGCt > 1:2517311/1‑72 (MQ=17) cGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTa > 1:2339417/1‑72 (MQ=255) ggC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCGGGCCTA‑CATTGGTGCCGGATCTGTAg < 1:4833497/72‑1 (MQ=255) ccc‑AATTAGTGCACGATGCCTGAAGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAg < 1:3527626/70‑1 (MQ=21) gC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGa < 1:2526889/72‑1 (MQ=255) c‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGGTCTGTTGAc > 1:6386724/1‑72 (MQ=255) c‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGaa > 2:6483085/1‑71 (MQ=255) c‑AATTGGTGCACGATGCCCGATGCGACGCCGGCGCCGCCTATCACGGCCA‑CATTGGTGCCCGATCTGTAGAc > 2:7009725/1‑72 (MQ=19) aaTTGNTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGGCGGATCTGTAGAcc > 2:416182/1‑72 (MQ=255) aaTTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGAcc > 1:4388099/1‑72 (MQ=255) aTTGGTGCACGATGCCCGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CCTTGGTGCCGGATCTGTAGAGCg > 1:3995667/1‑72 (MQ=21) ttGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCgg > 2:5229212/1‑72 (MQ=255) ggTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGAt < 2:2158890/72‑1 (MQ=255) gTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATa > 1:1473886/1‑72 (MQ=255) tGCACGATGCCTGATGCGACGCTGGCGAGTCTTATCAGGCCTA‑CATTGNTGCCGGATCTGTAGACCGGATaa < 1:4940952/72‑1 (MQ=25) gCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGTTCTGTAGACCGGATAAg > 1:7458383/1‑72 (MQ=255) gCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAg < 2:5897709/72‑1 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGGTAAggggg > 1:7114912/1‑69 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGCTAAGGCgg > 1:6040391/1‑71 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAGGCGt < 2:5200683/72‑1 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAGGCGt < 2:4997343/72‑1 (MQ=255) aTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAGGCGtt > 1:299371/1‑72 (MQ=255) aTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAGGCGtt < 2:2069808/72‑1 (MQ=255) aTGCCTGATGCGACGCTGCCGCGTGTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCCGGTAGGGCGtt < 2:5861170/72‑1 (MQ=21) tGCCTGATGCGACTCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAGGCGTTc < 2:3846744/72‑1 (MQ=255) tGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAGGCGTTc < 1:1488758/72‑1 (MQ=255) | TCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑AATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTA‑CATTGGTGCCGGATCTGTAGACCGGATAAGGCGTTC > NC_012967/4005819‑4005961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |