| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2703030 = | 132 (0.600) | 43 (0.250) +ACCGGCTTGGGCGTTA |
4/110 | 13.6 | 30.9% | intergenic (+154/‑138) | proX/ECB_RS13380 | glycine betaine/L‑proline ABC transporter substrate‑binding protein ProX/MFS transporter |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 135 total aligned reads displayed.
TGCCTACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTATCTTTCA > NC_012967/2702960‑2703101 | tGCCTACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATg > 1:2755744/1‑72 (MQ=255)tGCCTACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCCTTCTCTGCACAAtc > 1:3877723/1‑71 (MQ=255) ccTACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATgtc > 2:698598/1‑70 (MQ=255) ccTACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGcc > 1:1214561/1‑72 (MQ=255) ccTACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGcc > 1:611306/1‑72 (MQ=255) ccTACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGcc > 1:5369560/1‑72 (MQ=255) ccTACAAAAGACACTCATTCCGTATGGCGGGAAAGGAGTTCT‑CGCCGGATCCGGCGTTCTGTGAACAATGcc > 2:5316533/1‑72 (MQ=255) tACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTg > 1:6028505/1‑72 (MQ=255) aCAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGa > 2:1313815/1‑72 (MQ=255) cAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGAt > 2:1814721/1‑72 (MQ=255) aaaaTACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATg > 2:6441224/1‑72 (MQ=255) aaaaTACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATg > 1:103310/1‑72 (MQ=255) aaaTACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGc > 2:7464438/1‑72 (MQ=255) aaaTACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGc > 2:6256370/1‑72 (MQ=255) aaTACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCg > 2:5190413/1‑72 (MQ=255) aaTACACTCATTCCGTATGGCGGATAAGGCGCTTT‑CGCCGCATCCGCCGTTCTGTGCACAATTTCTGATTCg > 1:2050262/1‑72 (MQ=37) tACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGAc > 1:94087/1‑72 (MQ=255) acacTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACg > 1:6205273/1‑72 (MQ=255) cacTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTNTGCACAATGCCTGATGCGACGc > 1:3406059/1‑72 (MQ=255) cacTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGc > 2:5839145/1‑72 (MQ=255) acTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGcgccgcc > 2:226846/1‑71 (MQ=255) acTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGAccgt > 2:1948276/1‑69 (MQ=255) acTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCt > 2:2031436/1‑72 (MQ=255) cTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTg > 2:6437737/1‑72 (MQ=255) tCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTgg > 2:7509568/1‑72 (MQ=255) cATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgc > 1:5448472/1‑72 (MQ=255) cATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgc > 2:5924928/1‑72 (MQ=255) aTTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcg > 1:7123598/1‑72 (MQ=255) ttCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACCATGCCCGATGCGTCCGTGgcgg > 2:1373948/1‑71 (MQ=21) ccGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACCATGCCTTATTCGACCCCCGCGCGt > 2:1818553/1‑72 (MQ=21) ccGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGt > 2:7705398/1‑72 (MQ=255) gTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCt > 2:6988257/1‑72 (MQ=255) tATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCtt > 2:7549767/1‑72 (MQ=255) tATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCCCGTCtt > 1:5368780/1‑72 (MQ=255) gCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCa > 2:6161259/1‑72 (MQ=255) gCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGGCTTATCa > 2:5761615/1‑72 (MQ=255) cGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCCGGCCCGTCTTATcct > 1:3221552/1‑70 (MQ=18) ggATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGGCTTATCATg > 1:2657742/1‑72 (MQ=255) gATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGc > 2:3146466/1‑72 (MQ=255) gaaaGGCGTTTTCCCCCTCCCCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGc < 1:368875/70‑1 (MQ=14) aTAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTTTCATGcc > 2:393859/1‑72 (MQ=255) tAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGTCt > 2:4319884/1‑72 (MQ=255) aaGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa > 2:6284237/1‑72 (MQ=255) aaGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa > 2:5788435/1‑72 (MQ=255) aaGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa > 2:6222978/1‑72 (MQ=255) ggCTTTTC‑CGCCCCACCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACa < 1:5904287/72‑1 (MQ=18) cGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACaaa > 1:5855762/1‑72 (MQ=255) gTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTacacac > 2:5149706/1‑72 (MQ=255) gTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACCAAc > 2:1915917/1‑72 (MQ=255) gTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAc > 1:4384474/1‑72 (MQ=255) gTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCCGGCGCGTCTTATCATGCCTACAAAc > 1:4148040/1‑72 (MQ=255) gTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGATGGAGCGTCTTATCATGCCTACAAAc > 2:2697803/1‑72 (MQ=255) gTTTT‑CGCCGCATCCGCCGTTCTGCGCACAATGCCTGATGCGACGCTGGGGCGCCTTTTCCTGCCTACAAAc > 1:3877623/1‑72 (MQ=18) tttt‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCCGGCGCGTCTTTTTATGCCTACaaaac > 1:2735391/1‑70 (MQ=18) ttt‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACca > 2:7519675/1‑72 (MQ=255) tt‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACcac > 1:3947795/1‑72 (MQ=255) cgccgcATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTTTCCAGACTACAAACCACAt > 2:5308753/1‑72 (MQ=21) gccgcATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGGCTTATCATGCCTACAAAAcacaac > 2:3955843/1‑70 (MQ=17) cgcATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGc > 1:5036730/1‑72 (MQ=255) cgcATCCGCCGTTCTGTGCACAATGCCTGATGCGACCCTGGCGCGTCTTATCATGCCCACAAAACACATAGc > 2:4696706/1‑72 (MQ=17) gcATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACCAACCACATCGca > 1:7446741/1‑72 (MQ=255) gcATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGca > 2:7265411/1‑72 (MQ=255) cctcctccGTTCGTTGCACAATTCCTGATGCGACGCTGGCGCGTTTTATCATGCCTACAAACCACATCGcac < 2:3684956/70‑1 (MQ=18) cATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTTTCATGCCCACACACCCCATCGcac > 2:1605933/1‑72 (MQ=18) cATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGccc > 1:5438029/1‑70 (MQ=255) cATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac > 2:2052472/1‑72 (MQ=255) ccccgccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcaca < 2:3908576/70‑1 (MQ=255) aTCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGGCTTATCATTCCTACAAACCACCTCGcaca > 2:585309/1‑72 (MQ=18) aTCCGCCGTTCTGTGCACAATGCCTGATGCGACGCCCGCGCGCCTTCTCATGCCTCCAAACCACATCGcacc > 2:4993068/1‑71 (MQ=21) cgcccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAtt < 2:7310902/69‑1 (MQ=255) cgccgTTCTGTGCACAATGCCTGATGCGACGCCGGCGCGGCTTATCATGCCTACAAACCACATCGCACActt > 2:4555686/1‑72 (MQ=21) ccgTTCTGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca < 2:2288103/72‑1 (MQ=255) ccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca < 2:5959914/72‑1 (MQ=255) cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcca > 1:7401556/1‑70 (MQ=255) cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaa < 2:4843051/72‑1 (MQ=255) cgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaa < 1:1245239/72‑1 (MQ=255) gTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaac < 2:4373933/72‑1 (MQ=255) ttCTGTGCACAATGCCTGCTGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaaca < 1:2591663/72‑1 (MQ=255) ttCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaaca > 1:3275804/1‑72 (MQ=255) ttCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaaca < 2:2403061/72‑1 (MQ=255) tCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCGTATCATGCCTACAAACCACATCGCACATTTcaacaa < 1:5289543/72‑1 (MQ=255) ncTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaacaa < 2:2883128/71‑1 (MQ=255) cTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAg < 2:6784998/72‑1 (MQ=255) tgtgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGc > 2:3517318/1‑72 (MQ=255) tgtgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGc < 1:7256969/72‑1 (MQ=255) tgtgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGc > 2:7690822/1‑72 (MQ=255) tgtgCACAATGCCTGATGCGACGCCGGCGCGTCTTATTATGTCTACAAACCCCATCGCACACTTcaacaaac > 1:4658485/1‑70 (MQ=21) gtgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCt < 2:6154681/72‑1 (MQ=255) gtgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCt < 2:1518364/72‑1 (MQ=255) tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTa > 2:310773/1‑72 (MQ=255) cacaATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTATc < 2:4276932/72‑1 (MQ=255) cacaATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCCCATCGCACATTTCAACAAGCTATc < 1:6366026/72‑1 (MQ=255) acaATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTATCt > 2:7033570/1‑72 (MQ=255) acaATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTATCt < 1:5645955/72‑1 (MQ=255) caATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAANCCAGATCGCACATTTCAACAAGCTATCtt < 2:373551/72‑1 (MQ=255) caATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTATCtt < 2:5572007/72‑1 (MQ=255) aaTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTATCttt > 1:7033774/1‑72 (MQ=255) aaTGCCTGATGCGACGCCGGCGCGTCTTATCATGCCTACAAACCACAACGCACATTTCAACAAACTATCttt > 1:3905074/1‑72 (MQ=25) tGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTATCTTTCa < 2:262082/72‑1 (MQ=255) tGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTNCAACAAGCTATCTTTCa < 1:677875/72‑1 (MQ=255) | TGCCTACAAAATACACTCATTCCGTATGGCGGATAAGGCGTTTT‑CGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAAGCTATCTTTCA > NC_012967/2702960‑2703101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |