| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2703030 = | 132 (0.600) | 43 (0.250) +ACCGGCTTGGGCGTTA |
4/110 | 13.6 | 30.9% | intergenic (+154/‑138) | proX/ECB_RS13380 | glycine betaine/L‑proline ABC transporter substrate‑binding protein ProX/MFS transporter |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 117 total aligned reads displayed.
GACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAACTCTTC > NC_012967/4275148‑4275287 | gACAGCGCATTAGCCTGTTTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCACCCG‑ACATCAAt < 2:4458632/72‑1 (MQ=11)gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACTCC‑GCATCCG‑ACATCAAt < 2:1982170/72‑1 (MQ=14) aCAGCGCAATAGCCTGTTTGGGGGTGTTTTTGTAGGTCGA‑AAAAGGCTTTTCCGCC‑GCACCCG‑ACATCAATg < 2:4263131/72‑1 (MQ=2) aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATg < 2:7480742/72‑1 (MQ=32) gcAATAGCCTGATTTAGCTTGATTTTGTAGGTCGG‑ATAAAGCGTTTACGGC‑GCCCCCG‑CCATCAATGCCtca > 1:7355678/1‑70 (MQ=11) gaaaTAGCCTGTTTTAGCGTGTTTTTGTGGGCCGG‑AAAGGGCGTTAACCCC‑GCATCCG‑ACATCAATGCCTGa < 2:3992240/70‑1 (MQ=11) cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAAt < 2:5763663/65‑1 (MQ=31) cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAAt > 1:5763664/1‑65 (MQ=31) aTAGCTTTATTTGGCGTTTTTTTGTGGGTGGA‑AAAAGGCGTTTCCGCC‑CCACCCG‑ACATCAATGCCTGATG‑c < 1:5286175/72‑1 (MQ=12) tacccTGATTTAGCGTTATTTTGTAGGTCGG‑ATAAGGCGTTAACCCC‑GCACCCG‑ACATCAATGCCTGATG‑Cg < 2:7144145/69‑1 (MQ=11) gCCTGATTTAGCGTGTTTTTGTAGGTGGG‑ATAGGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGAc < 2:5216455/72‑1 (MQ=11) ccTGATTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGATG‑CGACg > 1:7676372/1‑72 (MQ=21) gATTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGATG‑CGACGCtt > 1:7349083/1‑72 (MQ=21) tttGGCGTATTTTTGT‑GGTCGGAATAGGGCTTTTACCCC‑CCACCCG‑ACATCAATGCCTGATG‑CGACGCTTGc < 1:4101064/72‑1 (MQ=2) tttAGCGTGATTTTGTAGGTCGG‑ACAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCGTGc > 1:6630873/1‑72 (MQ=255) ttAGCGTTTTTTTGTAGGTCGG‑ATAGGGCGTTTCCCCC‑GCACCCG‑ACATCAATGCCTGATG‑CGACGCTTGcc < 1:6208323/72‑1 (MQ=11) ttAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGcc < 1:6147099/72‑1 (MQ=35) ttAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGAAG‑CGGCGCTTTcc > 2:3224812/1‑72 (MQ=11) tAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCcg < 2:6422282/72‑1 (MQ=34) tAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCcg > 1:7310148/1‑72 (MQ=34) tAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGATG‑CGACGCCTGCcg > 1:5799447/1‑72 (MQ=255) aGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCcgc > 2:514760/1‑72 (MQ=34) gCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGGTT‑CGACGCTTGCcggg > 2:6983047/1‑70 (MQ=11) tGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGGCt > 2:6048287/1‑72 (MQ=21) tGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGGTG‑CTACGCCTTCCGCGTcc > 2:4918163/1‑71 (MQ=11) gttttGGGGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTa < 1:4118891/71‑1 (MQ=255) ttttGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGATG‑CGACGCTTGCCCCGTCtttt > 1:4362133/1‑70 (MQ=11) tttgGTGGGTCGG‑ATAGGGCGTTTCCCCC‑CCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTAt < 2:1555412/72‑1 (MQ=11) ttGTAGGTCGG‑ATAGGGCGTTTACGCC‑GCATCCG‑ACATCAATNCCTGATG‑CGACGCTTGCCGCGTCTTATCa < 2:381922/72‑1 (MQ=11) ttGTAGGTCGG‑ATAAGGCGTTTACGCA‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCcgc < 1:5935001/63‑1 (MQ=255) ttgaGGTCGGAAAAAGGCGTTTACCCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCa < 1:3963317/69‑1 (MQ=11) ggTAGGTCAG‑GTAAGGCGTTTACGCC‑GCACCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg < 1:2434378/71‑1 (MQ=11) aGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGAc < 1:3610827/50‑1 (MQ=38) ggTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGt < 1:7134480/60‑1 (MQ=35) tccGG‑AAAAGGCTTTTACCCC‑GCTCCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTa < 1:1989083/70‑1 (MQ=11) gTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGAc < 2:5947668/48‑1 (MQ=38) cGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCCGGCCTATc > 1:3938123/1‑72 (MQ=255) cGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATc > 1:3302473/1‑72 (MQ=39) gg‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGATG‑CCACGCCTGCCGCGTCTTATCCGGCctctct > 2:3115253/1‑72 (MQ=11) atcaGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTa < 1:3779517/69‑1 (MQ=255) aTAAGGCGTTTACCCCGGCACCGA‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCtt < 1:1856221/72‑1 (MQ=14) tAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCt < 1:5817670/45‑1 (MQ=38) tAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTaa > 2:367283/1‑72 (MQ=255) tAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTaa > 2:5281977/1‑72 (MQ=255) tAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGATG‑CGACGCTTGCCGCGTCTTATCAGGACTCTCTTaa > 1:2898102/1‑72 (MQ=14) aagggCTTTTACGCC‑CCCCCGG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTaa < 1:6171196/69‑1 (MQ=14) aatgCGTTTACGCC‑ACATCCGAACATAAATGCCTGAGG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTaa < 1:511133/69‑1 (MQ=14) aaGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑c > 2:4912525/1‑72 (MQ=255) aaGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCCGATG‑CGACGCCTTCCGCCTCTTTTCCGGCCCCNCTTAA‑c > 2:530039/1‑72 (MQ=11) aGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCtt < 2:4360580/54‑1 (MQ=35) aGGCGCTCACGCC‑CCACCCGAACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑c < 2:1849062/72‑1 (MQ=14) ggCGTTTCCCCC‑CCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCg < 2:3289745/72‑1 (MQ=17) ggCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCg > 1:1120742/1‑72 (MQ=255) gCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CCACGCTTGCCGCGTCTTATCAGGCCTCTCTTAA‑CCGt > 2:7551215/1‑72 (MQ=255) gCGTTTACCCC‑CCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGt < 2:6018279/72‑1 (MQ=255) cGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCt < 1:2010355/50‑1 (MQ=38) cGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGtt > 2:5416516/1‑72 (MQ=255) cGTTTACGCC‑GCATCCG‑ACATCAATGCCCGATG‑CCGCGCCTTCCGCCTCTTATCCGGGCCATCTTTA‑ACGtt > 1:6438964/1‑72 (MQ=9) gTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCcg < 2:2087533/44‑1 (MQ=38) gTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGttt > 1:2863008/1‑71 (MQ=255) tttACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTgg > 1:5016790/1‑72 (MQ=255) tttACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTgg > 1:5433985/1‑72 (MQ=255) tttACGCC‑GCATCCG‑ACATCAATGCCCGATT‑CGACGCCTTCCGCGGCTTATCATGACCATCTTAA‑CCGCTgg > 2:6858993/1‑72 (MQ=9) ttACGCC‑GCATCCG‑ATATCAATGCCTGATG‑CGACGCTTGCCGCGTCt < 1:421135/47‑1 (MQ=255) ttACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTg < 1:431847/39‑1 (MQ=40) tACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGc < 1:6622086/54‑1 (MQ=35) tACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTTGtt > 2:3732519/1‑72 (MQ=255) aCGCC‑GCATCCG‑ACATCAATGCCCGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGGTa > 1:4717021/1‑72 (MQ=255) cccc‑gcACCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTaa < 2:5360828/70‑1 (MQ=255) gcc‑gcATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCtt < 2:2650088/44‑1 (MQ=38) gcc‑gcATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAg < 1:1521723/49‑1 (MQ=38) gcc‑gcATCCG‑ACATCAATGCCCGATG‑CGACGCCTGCCCCCTTCTTTCAGGCCCATCCTAA‑CCGTTGGGTAAt > 2:2077284/1‑72 (MQ=12) ccc‑gcACCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAAt < 2:1999669/71‑1 (MQ=255) c‑gcACCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAAttt < 2:7567540/72‑1 (MQ=255) gcctCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAAtttt < 1:7358507/69‑1 (MQ=255) gcATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAActtt > 2:6327431/1‑72 (MQ=255) cATCCG‑ACATCAATGCCCGATG‑CGACGCTTGCCGCCTCTTACACGGCCTATCCTAA‑CCGCCGGTTTCttttt > 2:1972179/1‑72 (MQ=9) acccG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTc < 1:5297070/70‑1 (MQ=255) acccG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTc < 1:5399505/70‑1 (MQ=255) aTCCG‑ACATCAATGCCTGATG‑CGGCGCCTGCCGGGTATTGTTCGGCCCTTCTTAA‑CGCTTCGGTAAtttttt > 2:3728623/1‑71 (MQ=9) aTCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTa < 2:263589/40‑1 (MQ=40) aTCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTc > 1:3528320/1‑72 (MQ=255) aTCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTc > 2:3329191/1‑72 (MQ=255) tCCG‑ACATCAATGCCCGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTTA‑CCGTTGGTTAAtttttta > 2:6968044/1‑70 (MQ=21) cccG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCa < 2:1458610/71‑1 (MQ=255) ccG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTTTCAGGCCTATTTTAC‑CCGTTGGCTCAttttttca > 1:3672890/1‑69 (MQ=17) cG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCaaa > 1:1410515/1‑72 (MQ=255) gcaCATAAATGCCTGGCGCCGGCGTTTCCCGCGTTTTTTCGGCCCTATCTTAA‑CCGTTGGTTAATTTTTCaa < 1:322997/70‑1 (MQ=255) g‑ACTTCAATGCCTGATG‑CGAGGCTTGCCGCTTTTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAAc < 1:2545786/72‑1 (MQ=25) g‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCCGGCCCATCTTAC‑CCGCTGGTCATTTTTTCacac > 2:5384865/1‑72 (MQ=17) g‑ACATCAATGCCTGATG‑CCACGCCTTCCGCGTTTTATCCGGCCTATCTTAACCCGTTGTTTAATTTTTTaac > 2:716736/1‑71 (MQ=16) aCATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAAct < 1:7325775/72‑1 (MQ=255) cATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAActc < 1:5608742/72‑1 (MQ=255) cATCAACGCCTGATG‑CGACGCTTACCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAActc < 2:7557751/72‑1 (MQ=255) aTCAATGCCTGAGC‑GGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAActct < 2:1353756/72‑1 (MQ=37) tCATTGCCGGTTG‑CGACGCTTGCCGCTTTTTATCAGGNCTATCTTAA‑CCGTTGGTTAATTTTTCAAACTCtt < 1:414639/72‑1 (MQ=25) tCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAACTCtt < 2:5291186/72‑1 (MQ=255) cAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAACTCTTc < 2:7373484/72‑1 (MQ=255) cAATGCCGGGTG‑CGACGCTGGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAACTCTTc < 2:6199836/72‑1 (MQ=37) cAATGCCCGATG‑CGACGCTTTCCGCGTCTTTTCCGGCCTCTTCTTT‑CCGTTTGGTTATTTTTCAAACTCttt > 2:1475035/1‑71 (MQ=9) | GACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG‑ATAAGGCGTTTACGCC‑GCATCCG‑ACATCAATGCCTGATG‑CGACGCTTGCCGCGTCTTATCAGGCCTATCTTAA‑CCGTTGGTTAATTTTTCAAACTCTTC > NC_012967/4275148‑4275287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |