| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 840962 | 154 (0.710) | 3 (0.010) | 3/134 | 21.2 | 1.9% | intergenic (‑333/+71) | glnH/dps | glutamine ABC transporter substrate‑binding protein GlnH/DNA starvation/stationary phase protection protein Dps |
| ? | NC_012967 | = 841013 | 169 (0.830) | intergenic (‑384/+20) | glnH/dps | glutamine ABC transporter substrate‑binding protein GlnH/DNA starvation/stationary phase protection protein Dps | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 156 total aligned reads displayed.
TACAAAAAATTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATT > NC_012967/840891‑841033 | tACAAAAAATTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGca > 2:4830967/1‑72 (MQ=255) aCAAAAAATTTACTTAATCAGCTTGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGcaa < 2:2715909/72‑1 (MQ=255) aCAAAAAATTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGcaa > 2:5115259/1‑72 (MQ=255) aaaaaaTTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGcaaaa < 1:6453040/72‑1 (MQ=255) aaaTTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGcaaaacaa > 1:2632003/1‑72 (MQ=255) aaaTTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGcaaaacaa > 2:1830291/1‑72 (MQ=255) aaTTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGcaaaacaaa > 2:81543/1‑72 (MQ=255) aaTTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGcaaaacaaa > 1:210144/1‑72 (MQ=255) tttACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGGGGTGGGCTGCaaaacaaaac < 1:5206965/72‑1 (MQ=255) ttACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACg > 1:4470520/1‑72 (MQ=255) ttACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACg > 1:5043860/1‑72 (MQ=255) ttACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACg > 1:6731520/1‑72 (MQ=255) ttACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACg > 2:4634903/1‑72 (MQ=255) ttACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACg < 2:6124526/72‑1 (MQ=255) tACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACgg > 2:5001484/1‑72 (MQ=255) aCTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGc > 1:1019045/1‑72 (MQ=255) ttAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGcct > 1:1247286/1‑72 (MQ=255) tAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGcctc > 2:3329634/1‑72 (MQ=255) aTCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGcctcct < 2:3672935/72‑1 (MQ=255) cAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGt > 2:4671506/1‑72 (MQ=255) cAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGt > 1:6057279/1‑72 (MQ=255) cAGCGGGAGATAGCAGATGGATTCACTAAATAAGTGCGTTGAGGTGGGCTAAAAAACAAAACGGCCTCCTGt < 2:6936587/72‑1 (MQ=255) aGCTGGAGATAGCAGATGGATGCACTAAATAAGTGAGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTc > 2:3731332/1‑72 (MQ=255) gCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCa > 1:5875132/1‑72 (MQ=255) gCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCa > 1:5293177/1‑72 (MQ=255) gCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGACTCCTGTCa > 1:4070223/1‑72 (MQ=255) cTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAg > 1:4286388/1‑72 (MQ=255) cTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAg > 2:6280581/1‑72 (MQ=255) cTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAg > 1:3699065/1‑72 (MQ=255) tGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAgg > 1:197847/1‑72 (MQ=255) ggAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGa > 2:7130659/1‑72 (MQ=255) gagaTAGAAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGaa < 1:3649907/72‑1 (MQ=255) aTAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGcc > 1:5210499/1‑72 (MQ=255) aTAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCCCCTGTCAGGAAGcc > 1:5133877/1‑72 (MQ=255) tggCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCg < 2:3353911/70‑1 (MQ=255) tAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCg > 2:4223193/1‑72 (MQ=255) aGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGc > 2:6584519/1‑72 (MQ=255) aGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGc > 1:908649/1‑72 (MQ=255) cAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCtt > 2:7323907/1‑72 (MQ=255) cAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCACGAAGCCGCtt > 1:1324214/1‑72 (MQ=255) aGATGTATGCACTAAATAAGGGCTTTGAGGTGGGCTGAAAAAAAAAACGGCCTCCTGTCAGGAAGCCGCttt < 1:2460429/72‑1 (MQ=255) aGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCttt > 1:6913053/1‑72 (MQ=255) aGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCttt < 1:5760607/72‑1 (MQ=255) aGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCttt > 2:5652812/1‑72 (MQ=255) aGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCttt > 2:7159211/1‑72 (MQ=255) aGATGGATGCACTAAATAAGGGCGTTGGGTTGGGCTGAAAAACAAAACGGCCTCCTGTCAGGAAGCCGCttt < 2:5832080/72‑1 (MQ=255) gatggatgCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCtttt > 1:937338/1‑72 (MQ=255) atggatgCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTa > 1:4584277/1‑72 (MQ=255) ggatgCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATc > 1:4185281/1‑72 (MQ=255) ggatgCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATc < 2:210144/72‑1 (MQ=255) gatgCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGTAGCCGATTTTATCg > 2:3326277/1‑72 (MQ=255) gatgCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCg > 1:2954899/1‑72 (MQ=255) gatgCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCCTTTATCg > 1:2814960/1‑72 (MQ=255) tgCACTAAATAGGTGGGTTGGGGTGGGCTCAAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCggg < 1:4209507/72‑1 (MQ=255) gCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGt > 1:2123109/1‑72 (MQ=255) gCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCCTTTATCGGGt > 2:2595744/1‑72 (MQ=255) aCTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTAc > 1:6057566/1‑72 (MQ=255) cTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACt > 2:3868070/1‑72 (MQ=255) aaaTAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTaa > 1:2384226/1‑72 (MQ=255) aaaTAAGGGCGTGGAGGTGGCCTGAAAAAAAAACCGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTaa < 2:2843888/72‑1 (MQ=255) aaTAAGTGCGTCGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTtaa > 2:4201328/1‑72 (MQ=255) aTAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCGTTTATCGGGTACTTAAg > 1:594332/1‑72 (MQ=255) aaGTGCTTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGtt < 2:7450241/72‑1 (MQ=255) aaGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGtt > 1:5442316/1‑72 (MQ=255) tGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTg > 1:7320996/1‑72 (MQ=255) tGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTg > 2:524462/1‑72 (MQ=255) tGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTg > 2:6751791/1‑72 (MQ=255) gCGTTGAGGTGGGCTGCAAAACAAAACGGCCCCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCttc > 2:2931119/1‑70 (MQ=255) gCGTGGGGGGGGGCTGAAAAAAAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGc < 2:3382730/72‑1 (MQ=255) cGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCa > 1:298215/1‑72 (MQ=255) cGTTGAGGTGGGCTGAAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCa < 2:5827782/72‑1 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCag > 2:2427241/1‑71 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAc < 2:6913585/72‑1 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAc > 2:2209742/1‑72 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAc > 2:5229423/1‑72 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAc > 1:1584211/1‑72 (MQ=255) ttGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAcc > 1:1328054/1‑72 (MQ=255) ttGAGGTGGGCTGAAAAAAAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAcc < 1:1657713/72‑1 (MQ=255) tGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTATTAAAGTTCTGGACCa > 2:1767426/1‑72 (MQ=255) tGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCa > 2:764780/1‑72 (MQ=255) tGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCa > 1:4077885/1‑72 (MQ=255) gAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCAt > 2:6229967/1‑72 (MQ=255) aGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATc > 1:7275671/1‑72 (MQ=255) aGGTGGGCGGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATc < 2:2316748/72‑1 (MQ=255) ggTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCa < 2:6249069/72‑1 (MQ=255) ggTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCa > 1:3360011/1‑72 (MQ=255) ggTGGGCTGCAAAACAAAACGGCCCCCCGTCAGGGAGCCGGTTTTATCCGGTACTTAAATTTTGCACCATCa > 2:79088/1‑72 (MQ=255) gTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAg < 1:6066557/72‑1 (MQ=255) tGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAga > 2:5577025/1‑71 (MQ=255) ggCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGa > 2:1577133/1‑72 (MQ=255) gCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGAt > 1:2180981/1‑72 (MQ=255) gCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGAt > 1:6365987/1‑72 (MQ=255) cTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGaag > 1:1531446/1‑70 (MQ=255) tGCAAAACAAAACGGCCTCCTGTAAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATgg > 2:2304771/1‑72 (MQ=255) aaaaaaaaaaaacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATgg < 2:1299762/69‑1 (MQ=255) gCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGa > 1:5702709/1‑72 (MQ=255) caaaacaaaaCGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGAt > 2:5874385/1‑72 (MQ=255) caaaacaaaaCGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGAt > 1:5841006/1‑72 (MQ=255) aaaaaaaaaacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGAt < 2:1528864/71‑1 (MQ=255) aaaaaaaaacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGAtt < 2:6489511/72‑1 (MQ=255) | TACAAAAAATTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATT > NC_012967/840891‑841033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |