| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 840962 | 154 (0.710) | 3 (0.010) | 3/134 | 21.2 | 1.9% | intergenic (‑333/+71) | glnH/dps | glutamine ABC transporter substrate‑binding protein GlnH/DNA starvation/stationary phase protection protein Dps |
| ? | NC_012967 | = 841013 | 169 (0.830) | intergenic (‑384/+20) | glnH/dps | glutamine ABC transporter substrate‑binding protein GlnH/DNA starvation/stationary phase protection protein Dps | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 179 total aligned reads displayed.
GTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCGAGAC > NC_012967/840943‑841084 | gTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCCGGCAGCCGCTTTTATCGGGTACTAAAGTTCt > 2:707820/1‑72 (MQ=255) tGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTg > 1:7320996/1‑72 (MQ=255) tGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTg > 2:524462/1‑72 (MQ=255) gCGTTGAGGTGGGCTGCAAAACAAAACGGCCCCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCttc > 2:2931119/1‑70 (MQ=255) gCGTGGGGGGGGGCTGAAAAAAAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGc < 2:3382730/72‑1 (MQ=255) cGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCa > 1:298215/1‑72 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAc > 1:563973/1‑72 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAc > 1:1584211/1‑72 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAc < 2:6913585/72‑1 (MQ=255) gTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAc > 2:6081506/1‑72 (MQ=255) ttGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAcc > 1:1328054/1‑72 (MQ=255) ttGAGGTGGGCTGAAAAAAAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAcc < 1:1657713/72‑1 (MQ=255) ttGAGGGGGGCTGAAAAAAAAACCGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCAcc < 2:557425/72‑1 (MQ=255) tGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTATTAAAGTTCTGGACCa > 2:1767426/1‑72 (MQ=255) tGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCa > 1:4077885/1‑72 (MQ=255) gAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCAt > 2:6229967/1‑72 (MQ=255) aGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATc > 1:7275671/1‑72 (MQ=255) aGGTGGGCGGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATc < 2:2316748/72‑1 (MQ=255) ggTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCa < 2:6249069/72‑1 (MQ=255) ggTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCa > 1:3360011/1‑72 (MQ=255) ggTGGGCTGCAAAACAAAACGGCCCCCCGTCAGGGAGCCGGTTTTATCCGGTACTTAAATTTTGCACCATCa > 2:79088/1‑72 (MQ=255) ttGGACTGAAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAg < 2:4951874/71‑1 (MQ=255) gTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAg < 1:6066557/72‑1 (MQ=255) ggCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGa > 1:5271458/1‑72 (MQ=255) ggCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGa > 1:5741408/1‑72 (MQ=255) gCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGAt > 1:2180981/1‑72 (MQ=255) tGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATgg > 1:6593831/1‑72 (MQ=255) tGCAAAACAAAACGGCCTCCTGTAAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATgg > 2:2304771/1‑72 (MQ=255) caaaacaaaaCGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGAt > 2:5874385/1‑72 (MQ=255) caaaacaaaaCGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGAt > 1:5841006/1‑72 (MQ=255) caaaacaaaaCGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGAt > 1:5848082/1‑72 (MQ=255) acaaaacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTAt < 2:3842891/72‑1 (MQ=255) aaaacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATTGATTTAttt > 1:708775/1‑71 (MQ=255) aaaacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTc < 1:5475427/72‑1 (MQ=255) aaacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCg < 1:7001997/72‑1 (MQ=255) aaacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTAATCg > 1:1808476/1‑72 (MQ=255) aacGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGa > 2:102708/1‑72 (MQ=255) acGGCCTCCTGTCAGNGANCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGAt < 2:5324378/72‑1 (MQ=255) acGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGAt < 1:209493/72‑1 (MQ=255) acGGCCTCCTGTCAGGAAGCCGCTTTTATAGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGAt < 1:6149569/72‑1 (MQ=255) cGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATTGATTTATTCGATg > 2:1683028/1‑72 (MQ=255) aggCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATg > 2:4939972/2‑72 (MQ=255) gCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGtt < 1:1230140/72‑1 (MQ=255) cctcctGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTa < 1:6471168/72‑1 (MQ=255) tcctGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGa > 2:2438853/1‑72 (MQ=255) cctGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGAc > 1:2127863/1‑72 (MQ=255) cctGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGAc < 2:4097197/72‑1 (MQ=255) ctGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACt < 2:5511302/72‑1 (MQ=255) ctGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACt < 2:1583124/72‑1 (MQ=255) tGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGAccc > 1:2275069/1‑70 (MQ=255) tGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTc < 2:1898875/72‑1 (MQ=255) tGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTc < 1:1663071/72‑1 (MQ=255) tGNCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGNGATTATTTGAATTTAGACTc > 2:683934/1‑72 (MQ=255) cAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGAt > 2:2027989/1‑72 (MQ=255) cAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGAt < 2:559830/72‑1 (MQ=255) cAGGAAGCAGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGAt < 1:5200428/72‑1 (MQ=255) aGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATa < 2:1415685/72‑1 (MQ=255) aGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATa > 1:2370280/1‑72 (MQ=255) ggAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATaa < 1:4255431/72‑1 (MQ=255) gCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACca > 2:3043226/1‑72 (MQ=255) cggCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACcac < 1:2240788/70‑1 (MQ=255) cGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACcaca < 2:7409071/72‑1 (MQ=255) ttttATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCCATAAACCCCANGa > 2:610111/1‑72 (MQ=255) ttATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAAt < 2:5778513/72‑1 (MQ=255) ttATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAAt < 1:6306472/72‑1 (MQ=255) tATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAAtt < 2:3605647/72‑1 (MQ=255) tATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAAtt > 2:3960475/1‑72 (MQ=255) aTCGGGTACTAAAGTTCTGCACCATCAGCGATTGATTTATTCGATGTTAGACTCGATAAACCACAGGAAttt < 2:6692549/72‑1 (MQ=255) aTCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAAttt > 1:52869/1‑72 (MQ=255) tCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTa < 2:2109097/72‑1 (MQ=255) cGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTAt < 1:4195028/72‑1 (MQ=255) cGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTAt > 2:1133870/1‑72 (MQ=255) ggTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATcc < 2:6479578/72‑1 (MQ=255) gTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCa < 2:154690/72‑1 (MQ=255) tACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCNATAAACCACAGGAATTTATCCAg < 1:4832001/72‑1 (MQ=255) tACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAg < 2:6416815/72‑1 (MQ=255) tACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAg < 1:2532041/72‑1 (MQ=255) tACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCAAg > 2:3459288/1‑72 (MQ=255) aCTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAgg > 2:3025196/1‑72 (MQ=255) aCTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAgg < 1:6025701/72‑1 (MQ=255) aCTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAgg < 1:7526434/72‑1 (MQ=255) cTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGt > 1:329011/1‑72 (MQ=255) cTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGt < 1:2951027/72‑1 (MQ=255) cTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGt > 2:4416687/1‑72 (MQ=255) cTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAAATTATCCAGGt > 2:2721005/1‑72 (MQ=255) tAAAGTTCTGCACCATCAGCNATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGNTc < 2:690158/72‑1 (MQ=255) tAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTc < 1:1847/72‑1 (MQ=255) tAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTc < 1:301291/72‑1 (MQ=255) tAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTc < 2:6507954/72‑1 (MQ=255) tAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTc > 1:2036868/1‑72 (MQ=255) aaGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTcgc < 1:4525811/72‑1 (MQ=255) aGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTcgcg < 2:4716896/72‑1 (MQ=255) aGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTcgcg < 1:1512393/72‑1 (MQ=255) gTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCga > 2:4032748/1‑72 (MQ=255) gTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCga > 2:6690708/1‑72 (MQ=255) gTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCga < 2:764479/72‑1 (MQ=255) ttCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCgag < 2:7179363/72‑1 (MQ=255) cTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCGAGAc > 1:3525621/1‑72 (MQ=255) cTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCGAGAc > 2:2322269/1‑72 (MQ=255) cTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCGAGAc > 1:6220067/1‑72 (MQ=255) | GTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTATCCAGGTCGCGAGAC > NC_012967/840943‑841084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |