| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 880528 = | 222 (1.020) | 18 (0.100) | 17/114 | 11.8 | 10.6% | intergenic (+17/+163) | rcdA/ECB_RS04335 | DNA‑binding transcriptional regulator RcdA/hypothetical protein |
| ? | NC_012967 | = 904682 | 125 (0.720) | intergenic (+77/+159) | ECB_RS04500/ybjL | ogr/Delta‑like zinc finger family protein/aspartate:alanine antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 180 total aligned reads displayed.
CCGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCCACAAAATGGGGACATCAAAGA > NC_012967/904611‑904753 | ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc < 2:2061190/72‑1 (MQ=255)ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc < 1:2082296/72‑1 (MQ=255)ccgccATTTTGTCGCCATCGTTAAAAAACAGTGCNTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGc > 1:394238/1‑72 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGNTTTTAAAGAGCATAAATTTCAGGca < 1:835765/72‑1 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca < 2:5225267/72‑1 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca < 2:6379754/72‑1 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 1:5733932/1‑72 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca > 1:5110801/1‑72 (MQ=255) cgccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGca < 2:3030652/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa > 1:556532/1‑72 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 2:5737316/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 2:1141907/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 2:4668816/72‑1 (MQ=255) gccATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaa < 2:3628957/72‑1 (MQ=255) cATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaaca > 2:3445316/1‑72 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGNATAAATTTCAGGcaacaa > 1:2513659/1‑72 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa > 2:3720198/1‑72 (MQ=255) aTTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGcaacaa > 2:6293042/1‑72 (MQ=255) tttGTCGCCATCGTTAGAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaa > 1:382566/1‑72 (MQ=255) ttGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaa > 2:3305050/1‑72 (MQ=255) tGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACaaaaaa < 1:7225737/72‑1 (MQ=255) gTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAc < 1:6712304/72‑1 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAcc > 1:5174269/1‑72 (MQ=255) tCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAcc < 2:3289873/72‑1 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAccc < 2:1355968/72‑1 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAccc > 2:1763961/1‑72 (MQ=255) cGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAAccc > 1:5181112/1‑72 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCa < 1:2261683/72‑1 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCa > 1:1190841/1‑72 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCa > 1:4513212/1‑72 (MQ=255) gCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCa > 2:6500824/1‑72 (MQ=255) ccATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCAt < 2:4540776/72‑1 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATc > 2:4135517/1‑72 (MQ=255) cATCGTTAAAAAACAGTGCTTCTAACATCATGATTGTNAAGAGCATAAATTTCAGNNNACAAAAAACCCATc > 1:5327751/1‑72 (MQ=255) aTCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑a < 2:4787426/72‑1 (MQ=255) tCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAGGAGCATAAATTTCAGGCAACAAAAAACCCATC‑aa < 1:121297/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAc < 2:1050022/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAc < 1:4480108/72‑1 (MQ=255) cGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAc < 2:7430339/72‑1 (MQ=255) gTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCACC‑AAcc > 1:270625/1‑72 (MQ=255) ttAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑aaacc > 1:2789592/1‑69 (MQ=255) tAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCtt > 1:5015367/1‑72 (MQ=255) tAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCtt > 2:3573963/1‑72 (MQ=255) tAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCtt < 2:39717/72‑1 (MQ=255) aaaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAANCCCATC‑AACCTTg < 1:2402816/72‑1 (MQ=255) aaaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTg < 1:5374765/72‑1 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGa > 2:7104019/1‑72 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGa > 1:6853743/1‑72 (MQ=255) aaaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGa < 2:3968208/72‑1 (MQ=255) aaaaaCAGTGCTTCTAACATAATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGa > 2:6273194/1‑72 (MQ=255) aaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGat < 1:126274/72‑2 (MQ=255) aaaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGaa < 2:6467486/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAAc < 2:4423550/72‑1 (MQ=255) aaaCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAAc > 2:7479381/1‑72 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCg > 1:1834023/1‑72 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCg < 2:549155/72‑1 (MQ=255) aCAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACACATC‑AACCTTGAACCg < 1:6191285/72‑1 (MQ=255) gTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGaaa < 1:4237502/72‑1 (MQ=255) gTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGaaa < 2:2836876/72‑1 (MQ=255) gTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGaaa > 2:2049912/1‑72 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATg > 1:6307480/1‑72 (MQ=255) gCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATg < 1:5125322/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCggg < 1:3369067/72‑1 (MQ=255) tAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCggg < 1:7364093/72‑1 (MQ=255) aaCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCgggg < 2:5937823/72‑1 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATCAAACATTAAACCAAAAgggggggg > 2:1383518/1‑72 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTTAACCGAAAAGGCggggg > 1:1393017/1‑71 (MQ=255) aCATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGt < 1:6367146/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCgggggt > 1:6226777/1‑70 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGtt < 2:1217495/72‑1 (MQ=255) catcatGATTTTAAAGAGCATAAATTTCAGCCAACAAAAAACCCATC‑AACCTTGAACCGAAGTGGCGGGGtt < 1:3058193/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCTATC‑AACCTTGAACCGAAATGGCGGGGTTg < 2:382566/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTg < 1:7474585/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTg < 1:1965145/72‑1 (MQ=255) atcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGGTg > 1:6076262/1‑72 (MQ=255) tcatGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGa < 1:2242116/72‑1 (MQ=255) catGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAt < 2:1478527/72‑1 (MQ=255) atGATTTTAAATATCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAGATGGCGGGGTTGAT‑g < 1:4954714/72‑1 (MQ=255) atGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑g > 2:7498428/1‑72 (MQ=255) gATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGGTGGT‑ggg > 1:5945494/1‑72 (MQ=255) ttttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCt > 2:7230576/1‑72 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAGAACCCATC‑AACCCTGAACCGAAATGGCGGGGTTGAT‑GGGCTc < 2:379276/72‑1 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AAGCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTc < 1:410820/72‑1 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTc < 2:2052125/72‑1 (MQ=255) tttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTc < 1:7514855/72‑1 (MQ=255) ttAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCCGGGGTGAT‑GGGGTcc > 1:1802126/1‑72 (MQ=255) tAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCca > 1:1601229/1‑72 (MQ=255) aaaGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCcac > 1:7159017/1‑72 (MQ=255) aaaGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCcac > 1:7179211/1‑72 (MQ=255) aaaGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTCGAC‑GGGGTccca > 2:3420917/1‑70 (MQ=255) aaGAGCATAAATTTCATACAAAAAAAACCCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCcaca < 2:5092656/72‑1 (MQ=255) gagCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGGTGAT‑GGGCTCCACcaa > 2:1340931/1‑72 (MQ=255) aTAAATTTCAGGCAACAAAAAACCCCTC‑AACCTTGAACCGAAATGGCGGGGGTGGT‑GGGGTCCACcaaaaag > 1:5155768/1‑69 (MQ=255) tAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCCACAAAATggg > 2:7240658/1‑72 (MQ=255) aaaTTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCCACAAAATgggg < 2:5463256/72‑1 (MQ=255) aaaTTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGGTGATGGGGCCCCCCAAAACggg > 2:3559944/1‑72 (MQ=255) aTTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGGTGAT‑GGGGTCCCCAAAAAGGGGAc > 2:5627633/1‑72 (MQ=255) ttCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCCACAAAATGGGGACAt < 1:1921687/72‑1 (MQ=255) aGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGGTGGT‑GGGGTCCACAAAAAGGGGGcaacaa > 1:6828726/1‑72 (MQ=255) acaacaaAAAACCCATC‑AACATTGAACCGAAATGGCGGGGTTGAT‑GGGCTCGACAAAATGGGGACATCAAAg < 1:3188139/71‑1 (MQ=255) | CCGCCATTTTGTCGCCATCGTTAAAAAACAGTGCTTCTAACATCATGATTTTAAAGAGCATAAATTTCAGGCAACAAAAAACCCATC‑AACCTTGAACCGAAATGGCGGGGTTGAT‑GGGCTCCACAAAATGGGGACATCAAAGA > NC_012967/904611‑904753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |