| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 4487051 | 62 (0.220) | 12 (0.050) | 10/124 | 15.4 | 16.1% | coding (1102/1218 nt) | nanX | MFS transporter |
| ? | NC_012967 | = 4487275 | 71 (0.280) | coding (97/1119 nt) | nanY | 2,7‑anhydro‑N‑acetylneuraminate hydratase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA‑TTTCAGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/4486973‑4487051‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcaggatCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAAAGTATCCA < NC_012967/4487275‑4487205 TTAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCCCCTGTATTAGCTACATACA‑TT > 1:9919944/1‑72TTAGGGACCGGGCTTATTTATAACTTAGGGGCAACTGGAGGGATTGCCGCACCTGTTTTTGCTACATACA‑TT > 2:6043711/1‑72 TAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATAAA‑TTT > 1:2305320/1‑72 AGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTCGCTACATACA‑TTTC > 2:9565805/1‑72 GGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA‑TTTCA < 1:9552376/72‑1 GGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA‑TTTCAG > 2:8184297/1‑72 GGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCAACTGTATTAGCTACATACA‑TTTCAG > 1:7728832/1‑72 GACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA‑TTTCAGG > 1:9280534/1‑72 GACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA‑TTTCAGG < 2:2226099/72‑1 ACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA‑TTTCAGGA < 1:5453951/72‑1 ACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA‑TTTCAGGA > 1:3942473/1‑72 GTATTAGCTACATACATTTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACG > 2:2702962/1‑72 GTATTAGCTACATACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATTCATATTCATAAAACGA > 2:4813703/1‑72 TATTAGCTACATACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAG > 2:9071461/1‑72 CTACATACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATACAACGAGCTAATT > 2:3847060/1‑72 TACATACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTC > 2:4244957/1‑72 ACATACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCA > 2:3084467/1‑72 ACATACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCA > 2:3084486/1‑72 CATACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAG > 2:3074779/1‑72 ATACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGC > 2:4907884/1‑72 ACA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATCAAACGAGCTAATTCAGCGC > 2:1372620/1‑72 CA‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCC > 2:2299326/1‑72 A‑TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCA > 2:6514524/1‑72 TTTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAA > 1:1381551/1‑72 TTCAGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAAA < 1:5683427/72‑1 AGGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAAAGTA > 2:4020279/1‑72 GGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAAAGTAT < 1:2950075/72‑1 GGATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAAAGTAT < 1:9287711/72‑1 ATCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCGGCGCCAAAGTATCC < 1:4902981/72‑1 TCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAAAGTATCCA < 2:8311022/72‑1 TCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAAAGTATCCA < 2:8515414/72‑1 TTAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACA‑TTTCAGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_012967/4486973‑4487051‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcaggatCGTATACACATGTAATTTTTGCATTATCATGCATATTCATAAAACGAGCTAATTCAGCGCCAAAGTATCCA < NC_012967/4487275‑4487205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |