| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 480950 = | 106 (0.420) | 53 (0.250) +AGGGTGCGGGA |
7/120 | 15.7 | 33.9% | intergenic (+324/+93) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA |
| ? | NC_012967 | 2293996 = | 139 (0.560) | intergenic (+146/+62) | nrdA/ECB_RS25995 | ribonucleoside‑diphosphate reductase subunit alpha/protein YoaM | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/480988‑480950‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA > NC_012967/2293996‑2294036 ||||||||||| gtgGCCGGATGGGGCGTANACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGC < 1:3403666/69‑1 TGCCGNAGGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGC < 2:3373013/72‑1 TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGC < 1:6909942/72‑1 TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGC < 1:2150253/72‑1 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGATTTGTCGGGCTGGTCAGAGGCGCgg > 2:8235112/1‑70 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGATTTGTAGGCCCGATAAGACGCGCCA > 1:7814055/1‑72 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGA > 1:8511425/1‑60 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGA < 2:8511425/60‑1 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCG < 1:6979889/43‑1 CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCG > 2:6979889/1‑43 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGGGGGTGCGGGAAATTGTAGGCCGTATAAGACGCGCGAG > 1:1542740/1‑72 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCCGCAAAGACGCGCCAG > 1:2684359/1‑72 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGC < 1:8042135/41‑1 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGC > 2:8042135/1‑41 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAG < 1:7893526/36‑1 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAG > 2:7893526/1‑36 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCCCGC > 1:4136161/1‑72 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGG > 1:8761355/1‑42 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGG < 2:8761355/42‑1 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGAAGCGCGAGC > 2:2518587/1‑72 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAC < 1:7297380/63‑1 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAC > 2:7297380/1‑63 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGT < 2:4616333/49‑1 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGT > 1:4616333/1‑49 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCG > 2:424925/1‑40 GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCG < 1:424925/40‑1 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGC > 2:3862969/1‑64 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGC < 1:3862969/64‑1 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTG < 2:4813848/37‑1 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTG > 1:5656851/1‑37 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTG < 2:5656851/37‑1 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTG > 1:4813848/1‑37 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGT < 2:2177506/36‑1 ATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGT > 1:2177506/1‑36 TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCGGATAAGACGCGGCAGCGgc > 2:1370272/1‑70 TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGC > 2:1341418/1‑37 TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGC < 2:5152815/37‑1 TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGC < 1:1341418/37‑1 TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGC > 1:5152815/1‑37 CGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTT > 2:4916574/1‑43 CGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTT < 1:4916574/43‑1 CGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCG > 1:6908178/1‑36 CGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCG < 2:6908178/36‑1 GGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCCGATAAAACGCGCCAGCCGCGCA > 1:1138781/1‑72 GGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAT < 1:7302650/40‑1 GGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAT > 2:7302650/1‑40 GGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGG > 2:5746711/1‑37 GGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGG < 1:5746711/37‑1 GCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATT < 2:6810240/40‑1 GCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATT > 1:6810240/1‑40 CGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAA > 2:6846031/1‑53 CGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAA < 1:6846031/53‑1 CGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGA < 2:5728042/36‑1 CGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGA > 1:5728042/1‑36 GTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCc > 2:5339752/1‑71 TAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGC < 2:5304653/56‑1 TAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGC > 1:5304653/1‑56 AAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTTTAGGCCTCATAAAACGCGCCAGCGACGCATCCGG > 1:6519473/1‑72 AAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGA > 2:402301/1‑47 AAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGA < 1:402301/47‑1 AAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGG < 2:4437338/42‑1 AAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGG > 1:4437338/1‑42 ACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT > 2:921278/1‑43 ACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT < 1:921278/43‑1 ACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCCGANAACACACGCCAGCGCGGCGTCAGGgc > 2:962692/1‑70 TTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGAT < 2:226891/41‑1 TTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGAT > 1:226891/1‑41 GGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA < 1:7262108/39‑1 GGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA > 2:7262108/1‑39 GCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGC > 1:372160/1‑41 GCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGC < 2:372160/41‑1 GCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA < 1:2048262/38‑1 GCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA < 1:4734594/38‑1 GCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA > 2:2048262/1‑38 GCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGA > 2:4734594/1‑38 CCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAC < 2:8319514/38‑1 CCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAC > 2:6844666/1‑38 CCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAC < 1:6844666/38‑1 CCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAC > 1:8319514/1‑38 ||||||||||| ACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/480988‑480950‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA > NC_012967/2293996‑2294036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |