| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 480950 = | 106 (0.420) | 53 (0.250) +AGGGTGCGGGA |
7/120 | 15.7 | 33.9% | intergenic (+324/+93) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA |
| ? | NC_012967 | 2293996 = | 139 (0.560) | intergenic (+146/+62) | nrdA/ECB_RS25995 | ribonucleoside‑diphosphate reductase subunit alpha/protein YoaM | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 107 total aligned reads displayed.
CGCGTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGC > NC_012967/480916‑481021 | cgcgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg > 1:5369507/1‑72 (MQ=31) gcgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATGCGGGAGt > 1:4143742/1‑72 (MQ=9) gcgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCcagcagc > 2:8166915/1‑71 (MQ=9) gcgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGt > 2:5696069/1‑72 (MQ=32) gcgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATACGGCAGt < 1:1702755/72‑1 (MQ=17) gcgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGAGTTTACGCCGCCTCCGGCAGt > 1:1226472/1‑72 (MQ=255) cgccTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCACCCGGCAGTc > 2:94502/4‑72 (MQ=255) cgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTc > 1:5024463/1‑72 (MQ=34) cgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTc > 2:3815233/1‑72 (MQ=34) cgTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTc > 1:4279146/1‑72 (MQ=34) gTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCa > 1:6917160/1‑72 (MQ=35) gTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCa > 2:2292860/1‑72 (MQ=35) gTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCa > 2:4989847/1‑72 (MQ=35) tCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACAGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCAt > 2:1893084/1‑72 (MQ=255) cTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATg > 1:1944585/1‑72 (MQ=39) ttATCAGGCCTACAAN‑CCNGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGc < 2:6229433/72‑1 (MQ=255) ttATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGc > 1:7085923/1‑72 (MQ=40) ttATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGc > 1:2999793/1‑72 (MQ=40) ttATCAGGCCTACAAA‑CCTGT‑GCCTGAACAGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGc > 2:3660020/1‑72 (MQ=255) tATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCg > 2:3429170/1‑72 (MQ=255) tATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCg > 2:8086513/1‑72 (MQ=255) tccAGCCCTAGAAC‑CCTGG‑GCCTAACCCTTAGCCCGGTTAAGGCGTTTACCCCGCTTCCGGCAGTCATGCGt < 2:4224104/70‑1 (MQ=9) aTCGGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTNCGCCGCATCCGGCAGTCATGCGt < 1:5628485/72‑1 (MQ=255) aTCATGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGNCGTTTACGCCGCATCCGGCAGTCATGCGt < 2:430098/72‑1 (MQ=255) aTCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGt > 1:6666682/1‑72 (MQ=255) aTCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGt < 1:2236024/72‑1 (MQ=255) aTCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGt < 2:6659622/72‑1 (MQ=255) tCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCTGCAGTCATGCGTc < 2:5558323/72‑1 (MQ=255) cAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCg > 2:1886596/1‑72 (MQ=255) cAGGCCTACAAA‑CATGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCAGCAGTCATGCGTCg > 2:2798059/1‑72 (MQ=255) aGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGa > 1:4717572/1‑72 (MQ=255) ggCTTACAAA‑CCTGC‑GCCAGACCCGTGGGCCGGATAGGGGGTTTACGCCGCATCCGGCAGTCATGCGTCGAt < 2:7925564/72‑1 (MQ=17) ggCCTACAAC‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt < 1:2740624/72‑1 (MQ=255) ccccTACAAA‑CCTGC‑ACCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt < 2:6853065/70‑1 (MQ=17) gCCCACAAA‑CCTGTGGCCGGAACGGTGGGCCGGTGAGGGGGTTTACGCCGCATCCGGCAGTCATGCGTCGAt < 2:2015199/72‑1 (MQ=12) cccTACAAA‑CCTGG‑GCCGGAACCGGAGGCCGGATAGGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATg < 1:2179428/71‑1 (MQ=17) cccaCAAACCCTGT‑GCCTGAACCGTGGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATg < 2:6067109/69‑1 (MQ=17) ccTACNAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc > 1:847584/1‑72 (MQ=255) ccTACAAC‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc < 2:4329031/72‑1 (MQ=255) ccTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc > 2:7496816/1‑72 (MQ=255) ccTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc > 1:7650235/1‑72 (MQ=255) cTACAAC‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGNCGNTTACGCCGCATCCGGCAGTCATGCGTCGATGcc < 1:4123276/72‑1 (MQ=255) cTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGcc > 1:6492537/1‑72 (MQ=255) cTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGcc > 1:4072947/1‑72 (MQ=255) cTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGcc > 2:5831116/1‑72 (MQ=255) cTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGcc > 2:7068721/1‑72 (MQ=255) cTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCAGTCATGCGTCGATGcc > 2:7703397/1‑72 (MQ=255) tACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGcaa > 2:6702977/1‑70 (MQ=255) tACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCa < 2:7133526/72‑1 (MQ=255) tACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCa < 1:3995966/72‑1 (MQ=255) tACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCa > 1:7133526/1‑72 (MQ=255) tACAAA‑CCTGT‑GCATGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCa > 2:6480678/1‑72 (MQ=255) aCAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATACGGCAGTCATGCGTCGATGCCaa < 1:1689742/72‑1 (MQ=255) cAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGCTGccgac > 1:1182761/1‑69 (MQ=255) cAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATTCCaaa > 2:3872162/1‑72 (MQ=255) aaa‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGGCACAt > 1:7143792/1‑72 (MQ=255) aaa‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAAt > 2:6934376/1‑72 (MQ=255) aaa‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAAt > 1:2405468/1‑72 (MQ=255) aaa‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAAt < 1:6530710/72‑1 (MQ=255) aaa‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAAt > 1:5315682/1‑72 (MQ=255) aa‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCaaagg > 2:66013/1‑70 (MQ=255) a‑CCTGT‑GCCTGACCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgc < 2:3980933/72‑1 (MQ=255) a‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCTAATgc > 2:2972813/1‑72 (MQ=255) a‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCCAATgc > 1:5037872/1‑72 (MQ=255) a‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAACTgc > 2:1547479/1‑72 (MQ=255) a‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgc < 2:7035180/72‑1 (MQ=255) a‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgc < 2:8117641/72‑1 (MQ=255) a‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgc > 2:5440057/1‑72 (MQ=255) a‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCACGCGTCGAGCCCAAATgg > 2:1408165/1‑71 (MQ=17) a‑CCTGG‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgc < 1:1834904/72‑1 (MQ=255) ccTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgcg > 1:495341/1‑72 (MQ=255) ccTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGACGCCCAATgcg > 2:2575338/1‑72 (MQ=255) cggt‑gCCTGAACGGGAGGCGGGATAGGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgcgc < 1:5897079/70‑1 (MQ=21) cTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgcgc > 2:2025637/1‑72 (MQ=255) cTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgcgc > 1:2833137/1‑72 (MQ=255) cTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgcgc > 2:2289425/1‑72 (MQ=255) tgt‑gCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGcc > 1:5462553/1‑72 (MQ=255) t‑gCCTGAACAGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAc < 1:4881988/72‑1 (MQ=255) gggCCTGACCCGTAGCCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCa < 1:1547368/70‑1 (MQ=21) gCCTGAACCGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAcc < 1:8436846/72‑1 (MQ=255) gCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATTCCAAATGCGCAAcc > 1:5904699/1‑72 (MQ=255) gCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAcc > 2:5816047/1‑72 (MQ=255) gCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAcc > 1:5702119/1‑72 (MQ=255) gCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAcc > 2:4255756/1‑72 (MQ=255) ccTGACCCGTGGCCGGGATAGGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAccc < 2:1445635/72‑1 (MQ=21) ccTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAccc > 1:6441184/1‑72 (MQ=255) ccTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAccc < 1:2518398/72‑1 (MQ=255) ccTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAccc > 2:4928666/1‑72 (MQ=255) cTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCt < 2:8582026/72‑1 (MQ=255) tGAACCGTAGGCGGGGGAGGGCGTTTACCCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTa < 1:4702460/72‑1 (MQ=25) tGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAAGCCCAATGCGCCCCCCtc > 2:917320/1‑71 (MQ=18) tGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGAGTCGATGCCAAATGCGCCACCCTa > 2:8291849/1‑72 (MQ=255) gAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGGCACCCTaa > 1:3019105/1‑72 (MQ=255) gAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTaa > 1:8275622/1‑72 (MQ=255) gAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTaa > 1:757208/1‑72 (MQ=255) gAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTaa > 1:7449773/1‑72 (MQ=255) gAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGACGCCAAACGCGCCACCCTaa > 2:2879327/1‑72 (MQ=255) aaCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCCACTGCGCCACCCTaaa > 1:6245870/1‑72 (MQ=255) aCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCAACCCTACag > 2:2881781/1‑72 (MQ=255) ccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCCACagc > 2:3497865/1‑72 (MQ=255) | CGCGTCTTATCAGGCCTACAAA‑CCTGT‑GCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGC > NC_012967/480916‑481021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |