| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 3482704 = | 74 (0.300) | 6 (0.030) +CGCTCCGCCGCCAGTTCCCACT |
4/98 | 16.0 | 11.3% | coding (1020/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482706 | 63 (0.250) | coding (1022/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTGCGCTGGGAAATCCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/3482763‑3482704‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA < NC_012967/3482706‑3482636 |||||||||||||||||||||| GCTGCGCTTGGAAATCCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCCGCTCCGCCCCC > 1:3586035/1‑72 GGCGGCACGGTGGATTCCCGGCCGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGC < 1:1792913/72‑1 cgCGGTGCCTTCCCGGCCGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGC < 1:2753261/70‑1 ccCGGTGGATGTCCGCCGCCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGC < 2:8039981/70‑1 ctcCCGGCCGCTCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGG < 1:8517461/69‑1 tcCCGGCCCCCCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGA < 2:1347333/70‑1 CGGCCGCTCCCCCGCCGGTTCCCACCGGCCGCCCGGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGT < 1:6529041/72‑1 TCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCCGCGCCGGGGCCGGGAGGTACCAAA > 1:4686284/1‑72 TCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACCGGCAGCGCACGCGCAGGAAGGTAACAAA > 1:1923040/1‑72 ctCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACA < 1:5895965/70‑1 CGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACCGGCAGCGCGGGCGCAGGAAGTTACCATACA > 1:40972/1‑72 GCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCCGGGAGCGGGAGGTACCAAACAG > 1:2951216/1‑72 CCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACAAAACAGC < 1:6512663/72‑1 CCGCCAGTTCCCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGC < 1:7257770/72‑1 CGCCAGTTCCCACTGGCAGCTCCGCCTCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCG < 2:8012292/72‑1 CGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCCGGAAGGTACCAAACAGag > 2:8700646/1‑70 CGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCG < 2:6324433/72‑1 CGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCCCAGGGAGTTAACAAACAGCG > 2:6791811/1‑72 CGCCAGTCCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCG < 2:2506688/72‑1 CCAGTTCCCACTGGCAGCTCGGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGG < 1:3178645/72‑1 CCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTTGCGCAGGGAGGTACCAAACAGCCGG > 1:1614100/1‑72 CCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCCGGGAAGTAACAAACAGCGGG > 2:7762051/1‑72 CCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCCGGAAGTTACCAAACAGCGGG > 1:328192/1‑72 CCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCCGG > 2:6588144/1‑72 CAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGT < 2:2358533/72‑1 CAGTCCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGT < 2:3416667/72‑1 CAGTCCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGT < 2:7572653/72‑1 AGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTG < 2:6592820/72‑1 gtcCCCACTGGCGGGTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGA < 1:6396353/69‑1 GTTCCCACTGGCAGCTCCGCCGCCAGTTCCCCCCGGCAGCGCCGGCGCAGGAANGTACCAAACAGCCGGTGA > 1:3367621/1‑72 GTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGA < 1:322107/72‑1 tcCCCACTGGCCGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGAT < 2:2513670/70‑1 TTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGAT < 1:50696/72‑1 TTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGAT < 2:5457156/72‑1 cCCCGCTGCCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATA < 2:7163669/71‑1 CCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGGAGGTACCAAACAGCGGGGGGTAG > 2:5453/1‑72 CCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGC < 1:8531115/72‑1 CCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGC < 1:7058520/72‑1 CCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGC < 1:7315407/72‑1 CCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGC < 1:5685321/72‑1 CCACGGGCACCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGC < 2:2740281/72‑1 CACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCA < 1:4733469/72‑1 CACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCA < 2:4268221/72‑1 CACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGACAGCA > 2:6866945/1‑72 CTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGA < 1:4962477/72‑1 CTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGA < 1:2225969/72‑1 CTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGA < 2:8088637/72‑1 TGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA < 2:296183/72‑1 TGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGGGATAGCAGAA > 2:6959148/1‑72 TGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGGGAGANGAGAA > 2:3381110/1‑72 TGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCGGGCGCAGGAAGTTAGCAAACAACGGGTGATAGCAGAA > 2:6411712/1‑72 |||||||||||||||||||||| GCTGCGCTGGGAAATCCCTGGGCCATCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/3482763‑3482704‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA < NC_012967/3482706‑3482636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |