| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 3482704 = | 74 (0.300) | 6 (0.030) +CGCTCCGCCGCCAGTTCCCACT |
4/98 | 16.0 | 11.3% | coding (1020/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482706 | 63 (0.250) | coding (1022/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGC > NC_012967/3482633‑3482775 | tGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTg > 1:1171496/1‑72 (MQ=255)tGGTTCGGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTg < 2:2640803/72‑1 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGGGGGGCTGc > 2:2025204/1‑72 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGc > 2:5304686/1‑72 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGc < 1:8354132/72‑1 (MQ=255) gTTCTGCTCTCCCCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTgac < 1:6698578/72‑3 (MQ=255) gTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcc < 2:310685/72‑1 (MQ=255) gTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcc < 1:8498379/72‑1 (MQ=255) ttCTGCTATCCCCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcca < 2:6959148/72‑2 (MQ=255) ttCTGCTATCACCCGTTGTTTGCTAACTTCCTGCGCCCGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcca < 2:6411712/72‑2 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGGTGccc > 1:15980/1‑71 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcca > 2:296183/1‑71 (MQ=255) ttCTCNTCTCCCCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcca < 2:3381110/72‑2 (MQ=255) tCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGccag > 2:8088637/1‑70 (MQ=255) tCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGccag > 1:2225969/1‑70 (MQ=255) tCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGccag > 1:4962477/1‑70 (MQ=255) ggagcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCCGGAAGCTGGATGGgcc > 1:5989009/4‑72 (MQ=255) ggagcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAAACCACCCTGCCGCCGCAGAAAGACGGATGGgcc > 2:5249515/4‑72 (MQ=255) gcgcTGCGGGTGGAAACGGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCa < 2:5775680/72‑1 (MQ=255) gagcTGCCAGTGGGACCTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCa < 2:8760896/70‑1 (MQ=255) agcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAg > 2:7899424/2‑72 (MQ=255) agcTGCCAGTGGGAACTGGCGGCGGAGCTGCCCGGAAACCAACCCGCCCCCCCCGAAAGCTGGGGGGCCCAg > 2:7673748/2‑72 (MQ=255) gcTGCCGGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAgg < 1:1825690/72‑1 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGGAATCCACCGTGCCGCCGCAGGAAGCTGGAGGGCCCCgg > 2:2432249/1‑72 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAgg < 1:3443448/72‑1 (MQ=255) cTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAggg < 1:8616505/72‑1 (MQ=255) cTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCCTGCCGCCGCCGAAAGCCGGAGGGCCCCggg > 2:5468914/1‑72 (MQ=255) tGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGa > 1:6918020/1‑72 (MQ=255) gCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGAt < 2:4627160/72‑1 (MQ=255) caaGTGGGAACTGGGGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGAtt < 1:3150876/70‑1 (MQ=255) gTGGGAACTGGCGGCGGAGCTGCCGGAAATTCACCGTGCCGGCCCAGAAGGCTGGATGGGCCGGGGAatttc > 1:5009496/1‑70 (MQ=255) tGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGGGTTccc > 1:4480213/1‑72 (MQ=255) tGGGAACTGGCGGCGGAGCTGCCCGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGGTTTccg > 2:4228899/1‑71 (MQ=255) gggAACTGGCGGCGGAGCTGCCGGAAATCCACCCTGCCGCCGCAGAAAGCTGGATGGGCCAGGGGTTTcccc > 1:3027435/1‑71 (MQ=255) cggAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCca < 2:6639821/71‑1 (MQ=255) aaCTGGCGGCGGAGCCTCCTGAAATCCACCGTGCCGCCGCAGAAAGCGGGATTGGGCAGGGAATACCccgcc > 2:5282205/1‑71 (MQ=255) ccTGGCGGCGAGGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgc < 2:3787675/71‑1 (MQ=255) cTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgca > 2:5985510/1‑72 (MQ=255) tGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagggccg > 1:4820782/1‑70 (MQ=255) ggccggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcag < 2:2753261/69‑1 (MQ=255) gggggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagc < 2:5797789/69‑1 (MQ=255) gggggcggAGCGGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCaagcgcagc < 1:3586035/69‑1 (MQ=255) ggcggtGGAGATCGCGGGAATCCACCGTCCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagc < 1:5924204/72‑1 (MQ=255) ggcggcGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCctgcgcagc > 1:4002158/1‑72 (MQ=255) ggcggcGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagc < 1:6666122/72‑1 (MQ=255) gcgggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagc < 1:5202876/69‑1 (MQ=255) gcggcgGAGCTGCCGGAAATCCACCGTGCCGCCGCATAAAGCTGGATAGCCCAGGGATGTCCgcgcgcagcg > 2:8528240/1‑72 (MQ=255) gcggcgGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCccgcgccgcg > 2:7657252/1‑72 (MQ=255) gcggcgGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagcg < 1:8685413/72‑1 (MQ=255) acggcggGCCTGCCGGAAATCGACGGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagcg < 2:1270404/71‑1 (MQ=255) cggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGCTGTACCAGCGGAGCGa > 2:6526966/1‑72 (MQ=255) tgcgtAGCTGCCGCAATTCCTCCGTGCCTCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGAt < 2:789099/71‑1 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCccgcgccgcgcg > 2:3879858/1‑70 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCCGCGAt > 1:1562153/1‑72 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGAt < 2:3322665/72‑1 (MQ=255) gcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGAtt < 2:3449542/72‑1 (MQ=255) gcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGAtt < 2:2356393/72‑1 (MQ=255) ccggGGCCGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCATCGAtt < 2:529260/71‑1 (MQ=255) nggAGCTGCGGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtc < 2:3276434/71‑1 (MQ=255) cggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGTGCAGCGGTtc > 1:7991895/1‑72 (MQ=255) cggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGaata > 2:6111393/1‑69 (MQ=255) ggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGGTtca > 1:7976175/1‑72 (MQ=255) ggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtca > 1:4134554/1‑72 (MQ=255) ggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtca > 2:6106187/1‑72 (MQ=255) ggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtca > 1:6877483/1‑72 (MQ=255) ggAGCTGCCGGAAATCCACCGTGACGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtca > 2:61660/1‑72 (MQ=255) gAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGAGtcat > 2:6504534/1‑72 (MQ=255) gAGCTGCAGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtcat < 2:8456894/72‑1 (MQ=255) caGCTGCCGGAAATCCACCGGGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtcat < 1:29517/71‑1 (MQ=255) aGCTGCGGGAAATCCACCGGGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtcatc < 2:2020189/72‑1 (MQ=255) gCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtcatca > 1:3830826/1‑72 (MQ=255) cTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTcatcat < 2:2020053/72‑1 (MQ=255) tGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATg < 1:4637534/72‑1 (MQ=255) tGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCCATTCATCATg > 2:7038206/1‑72 (MQ=255) gCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATgc > 2:8216769/1‑72 (MQ=255) gCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATgc > 2:8401874/1‑72 (MQ=255) | TGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGC > NC_012967/3482633‑3482775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |