| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 480849 = | NA (NA) | 53 (0.250) +AGGGTGCGGGA |
7/120 | 15.7 | 31.1% | intergenic (+223/+194) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA |
| ? | NC_012967 | 2293996 = | 139 (0.560) | intergenic (+146/+62) | nrdA/ECB_RS25995 | ribonucleoside‑diphosphate reductase subunit alpha/protein YoaM | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGATGCGA > NC_012967/480816‑480909 | gcgTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGccgcatcccgcatc > 1:5511099/1‑72 (MQ=17)gcgTCTTATCAGGCCTAAAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcatc < 2:7869755/72‑1 (MQ=17) cgTCTTATCGGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcatcc < 2:8490819/72‑1 (MQ=21) cgTCTTATCAGGCCTACAGACCGGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcatcc < 1:6903965/72‑1 (MQ=255) cgTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcatcc > 1:3472116/1‑72 (MQ=34) gTCTTATCAGGCCTANAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcatccg > 2:865250/1‑72 (MQ=21) tCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGa > 1:6267545/1‑72 (MQ=35) tCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGa < 2:6602830/72‑1 (MQ=34) tCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGa > 1:8492689/1‑72 (MQ=35) cTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccggcatccgcg > 2:4283993/1‑70 (MQ=25) cTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTCCGAg > 2:1743269/1‑72 (MQ=21) cTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAg > 1:229824/1‑72 (MQ=35) cTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAg > 2:7881679/1‑72 (MQ=35) ttATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGc > 2:7061765/1‑72 (MQ=35) tATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCa > 2:2921463/1‑72 (MQ=35) aTCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCATCCGAGCAc > 2:5941742/1‑72 (MQ=255) aTCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCAc > 1:7464357/1‑72 (MQ=35) aTCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCCAGCAc > 1:1509888/1‑72 (MQ=21) aTCAGGCCTACAAACCTGTGCCTGAACCGTAGCCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCAc > 2:4157200/1‑72 (MQ=21) tCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCTTTTACGCCGCATCCGGCATCCGAGCAcc > 1:2092041/1‑72 (MQ=255) cAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCa > 2:3637889/1‑72 (MQ=35) cAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCCGAGccccc > 2:1213457/1‑71 (MQ=255) cAGGCCTACAAACCTGTGCCTGAACCGTACGCCGGATAAGGCGTCTACTCCGCCTCCGGCATCCGAGGAcct > 2:3820391/1‑71 (MQ=11) gCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCaatt > 1:830154/1‑69 (MQ=21) gCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTg > 1:8673290/1‑72 (MQ=35) gCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACAA‑ttc > 2:3604233/1‑71 (MQ=19) gCCTAAAACCCTGGGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTg < 2:3784123/72‑1 (MQ=11) ccTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TAGc > 2:1659230/1‑72 (MQ=25) cTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGTCGCATCCGGCATCCGAGCACCA‑TTGcc < 1:3451327/72‑1 (MQ=21) cTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGcc > 2:7731354/1‑72 (MQ=35) cTACAAACCTGTGCCTGAACCGTAGACCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTgac > 2:2538772/1‑70 (MQ=255) cAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCCCCGAGCACCA‑TTGccctc > 2:7630303/1‑69 (MQ=11) cAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGa > 2:5987330/1‑72 (MQ=34) cAAACCTGGGCCTGACCCGTAGGCGGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGa < 2:7554870/72‑1 (MQ=11) cacccTGTGCCGGAACCGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCATCGGAGCACCA‑TTGCCTGAt < 2:2150315/69‑1 (MQ=11) aaaCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGAt > 1:8344931/1‑72 (MQ=35) aaaCCTGTGCCTGAACCGTAGGCCGGANAAGGCGTTTACGCNGCATCCGGCATCCGAGCACCATTTGCCTGa > 1:429414/1‑72 (MQ=11) aaaCCTGGGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGAt < 2:6843134/72‑1 (MQ=21) acccTGTGCCTGACCCGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGATg < 2:5381237/70‑1 (MQ=11) aaCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGATg > 1:8585006/1‑72 (MQ=35) aaCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCCGaag > 1:8067453/1‑70 (MQ=255) aCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGATGc < 2:8272224/72‑1 (MQ=34) aCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCCGATGc > 1:4670459/1‑72 (MQ=21) ccTGTGCCTGAACCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCCGATGCg > 1:7548664/1‑72 (MQ=255) ccTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑CTGCCTGAcgcg > 2:7990880/1‑72 (MQ=255) ccTGTCCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGATGCg < 2:334598/72‑1 (MQ=17) cTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCATCCGAGCACCA‑ATGCCCGGTGCgg > 2:5498410/1‑71 (MQ=11) cTGTGCCTGAACCGTAGGCCGGATAAGGCGTTNNNGNCGCATCCGGCATCCGAGCACCA‑TTGCCTGATGCgc > 1:8589146/1‑71 (MQ=9) | GCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCA‑TTGCCTGATGCGA > NC_012967/480816‑480909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |