| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 480849 = | NA (NA) | 53 (0.250) +AGGGTGCGGGA |
7/120 | 15.7 | 31.1% | intergenic (+223/+194) | ybaQ/copA | HigA family addiction module antitoxin/copper‑exporting P‑type ATPase CopA |
| ? | NC_012967 | 2293996 = | 139 (0.560) | intergenic (+146/+62) | nrdA/ECB_RS25995 | ribonucleoside‑diphosphate reductase subunit alpha/protein YoaM | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 143 total aligned reads displayed.
AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCA > NC_012967/2293925‑2294067 | gCGTCGCATCGGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGAt < 1:5027753/72‑1 (MQ=255) gCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGAt < 1:2963813/72‑1 (MQ=255) cGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGAtt < 2:4960918/72‑1 (MQ=255) tCGCATCAGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTg > 1:6756102/1‑72 (MQ=255) cGCATCAGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGGTTTGt > 2:1522191/1‑72 (MQ=255) cGCATCAGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGt > 1:1727085/1‑72 (MQ=255) gCATCAGGCTCCGGGTGCCCGGTGCAGCGT‑GGACGCCCTTTCCCGGCCACGGGCCCACGGGCTCGGGTTTGt > 2:336903/1‑72 (MQ=255) cATCAGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGAATTGTAg > 2:3689793/1‑72 (MQ=255) aTCAGGCTCCGGGTTCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCCGGATTGTatg > 1:39973/1‑70 (MQ=21) gggCTCCGGGTGCCGGATGCGGCGT‑GACCGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCt < 1:4490553/71‑1 (MQ=255) gCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGa < 1:1285685/72‑1 (MQ=255) cTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGag > 2:5669006/1‑71 (MQ=255) cTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCCGAt > 2:6779139/1‑72 (MQ=255) ccggggTCCGGGAGGCAGCGT‑GACCCCTTTACCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATa < 2:8430459/69‑1 (MQ=25) cggggTGCCGGATGCAGCGT‑GACCGCTTTTCCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATaa < 2:2754265/70‑1 (MQ=37) cGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAg > 1:3704112/1‑72 (MQ=255) gggTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGa > 2:6491575/1‑72 (MQ=255) ggTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGCTTTTTTGGCCTGACAAGAc > 2:3127814/1‑72 (MQ=21) ggTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGAc < 1:8259270/72‑1 (MQ=255) ggTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGAc > 1:5916036/1‑72 (MQ=255) ggTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGAc > 2:6793548/1‑72 (MQ=255) tGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCGGATAAAAcgc > 2:4226795/1‑72 (MQ=255) ccgggATGCCGCGT‑GACCCCTTTCCCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGTCTGATAAGAcgcg < 1:7625456/69‑1 (MQ=21) ccGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACgcgc > 2:319348/1‑72 (MQ=255) cGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGAcgcggc > 1:7465943/1‑70 (MQ=255) cGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGcc > 1:4945208/1‑72 (MQ=255) ggATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGGCa > 2:4590875/1‑72 (MQ=255) ggATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCa > 1:6208860/1‑72 (MQ=255) ggATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCa > 1:8098439/1‑72 (MQ=255) ggATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGAGCCa > 2:4340346/1‑72 (MQ=255) aTGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCC‑Gc > 1:540668/1‑72 (MQ=255) aTGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑Gc > 1:4427574/1‑72 (MQ=255) tGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCc‑gcg > 2:5218523/1‑72 (MQ=255) tcAGCGTGGACCGCCTAACCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCg < 2:685476/71‑1 (MQ=21) gCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCgg > 2:6460917/1‑71 (MQ=255) cAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTc > 1:2232139/1‑72 (MQ=255) cAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTc < 1:8483274/72‑1 (MQ=255) cAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAAGCCTGATAAGACGCGCCA‑GCGTc > 1:4218362/1‑72 (MQ=255) cAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAAGCCTGATAAGACCCCCCA‑GCgcc > 1:3051044/1‑70 (MQ=37) cAGCGT‑GAACGCCNTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCC‑GCGtg > 1:2817191/1‑71 (MQ=255) cGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCa > 1:6512048/1‑72 (MQ=255) cGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAAGCCTGATAAAACGCGTCA‑CCGTCgtg > 1:7050023/1‑70 (MQ=25) cGT‑GAACGCCTTACCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCa < 1:5931943/72‑1 (MQ=255) gT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCAt > 2:8714567/1‑72 (MQ=255) gAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACCCGCCC‑GCGTCGCATCa > 2:193759/1‑72 (MQ=255) aaCGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAg > 2:4474364/1‑72 (MQ=255) gCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCC‑‑‑TAAGACGCGCCA‑ACGTCGCATCAGGCACAg < 2:7078617/72‑1 (MQ=25) ccTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGcac > 1:7459809/1‑72 (MQ=255) cTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGcaca > 2:2397551/1‑72 (MQ=255) cTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGcaca < 1:6870879/72‑1 (MQ=255) ttATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAg > 1:7010799/1‑72 (MQ=255) ttATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCCTCGCATCCGGCCCAg > 2:4206189/1‑72 (MQ=21) tATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCCGGCACAgg > 2:2952661/1‑72 (MQ=255) ccGGCCTGCGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCAACAGGGACACGagt > 1:1205275/1‑70 (MQ=18) cGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATgc > 1:1681430/1‑72 (MQ=255) cGGCCTACGGCTCNAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATgc > 1:2808403/1‑72 (MQ=255) gCCTACTGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATgcgg > 2:8327099/1‑72 (MQ=255) gCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATgcgg > 2:5219623/1‑72 (MQ=255) cgtacggatcaac‑ggctcGGATTTGTAGCCCTAATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATgcggc < 2:8634740/70‑1 (MQ=21) ccTACGGCTCTAC‑GGCTCGGTTTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATgcggc < 2:7066264/72‑1 (MQ=255) ccTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCACGAGGCACAGGATgcggc > 2:5336754/1‑72 (MQ=255) ccTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCACCAGGCACAGGACgcggt > 2:5336763/1‑71 (MQ=255) ctacggctctac‑ggctCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCNCAGGATgcgggg > 1:950360/1‑70 (MQ=255) acggctctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATgcggcgga > 1:3660081/1‑70 (MQ=255) acggctctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTa > 2:3964454/1‑72 (MQ=255) acggcgctac‑gcctcGGATTTGTAGGCCTGATAAGCCGCGCTG‑CGGTCGATTCGGGCACAGGATGCGGCGTa < 2:8550424/72‑1 (MQ=16) gggctctac‑gccccGGGTTTAGAGGCCTAATAAGACGCGCCA‑GCGTCGCATCGGGCACAGGATGCGGCGTaa < 2:3813626/71‑1 (MQ=21) cggctctac‑ggctcGGATTTGTAGGNCTGATAAGACGCGCCA‑GCGTCCCCACAGGCCCAGGACCCGGCGTaa > 1:991108/1‑72 (MQ=18) cgcctctgc‑ggctgGTTTTTGTGGGCCTAAAAGGACGCGCCG‑GCGTCGAATCGGGCACAGGATGCGGCGTaa < 1:2744488/69‑1 (MQ=255) ggctctac‑ggctcTGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTaaa > 1:6376448/1‑72 (MQ=255) ggctctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTaaa > 1:4071768/1‑72 (MQ=255) ggctctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTaaa > 1:2742637/1‑72 (MQ=255) gctctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTaaaa > 1:7281308/1‑72 (MQ=255) gctctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTaaaa > 2:5375443/1‑72 (MQ=255) gctctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTaaaa > 2:5677011/1‑72 (MQ=255) actcaac‑ggctgGTATTGGTAGCCCGGTAAAGCCGGGCCA‑GCGTCGCATCGGGCACAGGATGCGGCGTaaaa < 2:8249886/71‑1 (MQ=16) ctctac‑gggtcGGATTGGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAAt < 1:8328306/72‑1 (MQ=255) tctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAACATg > 2:3904599/1‑72 (MQ=255) tctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATg > 1:5934822/1‑72 (MQ=255) tctac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATg > 1:3528820/1‑72 (MQ=255) ctac‑ggctcGGATTTGTAGGCCTGATAAGAAGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGc > 2:5119797/1‑72 (MQ=255) tac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGcc > 1:7573675/1‑72 (MQ=255) ac‑ggctgGGATTTGTAGGCCTGATAGGCCGCGCCG‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCt < 2:3972892/72‑1 (MQ=25) ac‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCCCAGGATGCGGCGTAAAATGCCt > 2:4354022/1‑72 (MQ=255) c‑ggctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCtt > 2:6047206/1‑72 (MQ=255) ggctgGGTTTTGTAGGCCTGATAAGCCGCGCCG‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTa < 2:2894194/72‑1 (MQ=25) gctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCCTCAGGCACAGGAAGCGGCGTAAAACGCCTTAt > 2:6500000/1‑72 (MQ=25) gctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTAt < 1:5833787/72‑1 (MQ=255) ctcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTact > 2:5897697/1‑70 (MQ=255) tcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATcc > 1:5169017/1‑72 (MQ=255) tcGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATcc < 2:6856787/72‑1 (MQ=255) ccGGATTGGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATcc < 1:4048843/71‑1 (MQ=255) ggtaTTTGTAGGCCGGAGAAGCGGCCCCG‑GCGTGGAATCGGGCACAGGATGCGGCGTAAAATGCCTTATCCg < 1:2624106/69‑1 (MQ=19) cGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCg < 2:7436041/72‑1 (MQ=255) cGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCg > 1:585932/1‑72 (MQ=255) cGGATTGGGAGGCCTGATACGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCg < 2:4577599/72‑1 (MQ=25) ggATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCgg > 1:5400484/1‑72 (MQ=255) gATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGCCGTAAAATGCCTTATCCGGc > 1:2179301/1‑72 (MQ=255) aTTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCa > 1:7271164/1‑72 (MQ=255) aTTTGTAGGCCTGAATAGGCGCGCCACGGTTGGAATGAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGc < 1:1983368/72‑1 (MQ=16) | AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGT‑GAACGCCTTATCCGGCCTACGGCTCTAC‑GGCTCGGATTTGTAGGCCTGATAAGACGCGCCA‑GCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCA > NC_012967/2293925‑2294067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |