| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 602385 | 318 (1.270) | 3 (0.010) | 3/118 | 18.2 | 1.3% | coding (523/816 nt) | fepC | iron‑enterobactin ABC transporter ATP‑binding protein |
| ? | NC_012967 | 1546703 = | 204 (0.980) | coding (2439/2784 nt) | pqqL | insulinase family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 326 total aligned reads displayed.
CGCAAGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTC > NC_012967/602314‑602456 | cGCAAGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATc < 1:2412678/72‑1 (MQ=255)cGCAAGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACCGATATc > 1:1035478/1‑72 (MQ=255) gCAAGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATcc < 2:7867866/72‑1 (MQ=255) gCAAGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATcc > 2:4313715/1‑72 (MQ=255) cAAGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATcca < 2:5141349/72‑1 (MQ=255) aaGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATccag > 1:2691442/1‑72 (MQ=255) aaGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATccag < 1:6547179/72‑1 (MQ=255) aaGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATccag > 1:73615/1‑72 (MQ=255) aaGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATccag < 1:1313553/72‑1 (MQ=255) aGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATccagc < 2:3909321/72‑1 (MQ=255) aGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATccagc < 2:4438977/72‑1 (MQ=255) aGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATccagc < 1:4245067/72‑1 (MQ=255) gCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATccagcc > 1:1833627/1‑72 (MQ=255) tataGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAgg < 2:7519165/72‑1 (MQ=255) ataGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGt < 1:1656970/72‑1 (MQ=255) ataGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGt > 1:8540688/1‑72 (MQ=255) ataGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGt > 2:4039222/1‑72 (MQ=255) taGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTc < 2:1005274/72‑1 (MQ=255) taGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTc > 1:4155190/1‑72 (MQ=255) aGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCg < 2:8516151/72‑1 (MQ=255) aGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCg > 2:6691639/1‑72 (MQ=255) aGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCAAGCCAGGTCg > 2:5488141/1‑72 (MQ=255) gCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGt < 2:6923772/72‑1 (MQ=255) cTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTgg > 2:4121557/1‑72 (MQ=255) cTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTgg > 2:3489483/1‑72 (MQ=255) ctcGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTtc > 2:4766762/1‑72 (MQ=255) ctcGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTtc > 2:2342305/1‑72 (MQ=255) gcgGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTtcgtc < 2:1960759/72‑1 (MQ=255) gcgGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTtcgtc < 1:1437511/72‑1 (MQ=255) gcgGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTAGTGGGTtcgtc < 1:1491694/72‑1 (MQ=255) cgGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTtcgtcg < 1:6161541/72‑1 (MQ=255) ggTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGa < 1:4555341/72‑1 (MQ=255) ggTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGa > 1:3432115/1‑72 (MQ=255) ggTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGa > 1:3229626/1‑72 (MQ=255) gTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGag < 2:7408339/72‑1 (MQ=255) ttCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagc > 2:4513524/1‑72 (MQ=255) tCAGTTCGCTTAACAGTTCGAGCAAATCAATCTGATTACTGATATCCAGCCAGGTCGTGGGTTCGTCGagca < 2:519318/72‑1 (MQ=255) cAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATTACTGATATCCAGCCAGGTCGTGGGTTCGTCGagcag > 1:4920160/1‑72 (MQ=255) cAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagcag > 2:7741083/1‑72 (MQ=255) cAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagcag > 1:3538451/1‑72 (MQ=255) cAGTGNGATTAACAGATCCAGCAAATCAATCAGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagcag < 2:3354373/72‑1 (MQ=255) aGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTGCTCGagcagc > 2:2235913/1‑72 (MQ=255) aGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagcagc > 1:1260419/1‑72 (MQ=255) aGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGagcagc > 1:8179145/1‑72 (MQ=255) gTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAgcagca > 1:3305559/1‑72 (MQ=255) gTTCGCTTAACAGTTCCAGCAAANCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAgcagca > 1:5622151/1‑72 (MQ=255) ttCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGNAGCAt < 1:839390/72‑1 (MQ=255) ttCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCAt < 1:2835432/72‑1 (MQ=255) tCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATa > 1:4042912/1‑72 (MQ=255) tCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATa < 2:6071085/72‑1 (MQ=255) cGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATaa < 1:5202317/72‑1 (MQ=255) cGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATaa < 2:7159576/72‑1 (MQ=255) cGCTGAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATaa < 2:3161413/72‑1 (MQ=255) gCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAAt < 1:5487275/72‑1 (MQ=255) gCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAAt > 2:3773530/1‑72 (MQ=255) gCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCAAGCCAGGTCGTGGGTTCGTCGAGCAGCATAAt < 1:337885/72‑1 (MQ=255) tAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGc > 1:906772/1‑72 (MQ=255) aCAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCg < 1:7658726/72‑1 (MQ=255) cAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGt < 2:5858592/72‑1 (MQ=255) aGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCNAGNAGCATAACTGCCGtt > 2:6230286/1‑72 (MQ=255) aGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGtt < 2:2550380/72‑1 (MQ=255) aGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGtt < 2:424038/72‑1 (MQ=255) gTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGttt > 1:7245366/1‑72 (MQ=255) gTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGttt < 1:1553714/72‑1 (MQ=255) ttCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTc > 1:3942777/1‑72 (MQ=255) ttCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTc < 1:5905852/72‑1 (MQ=255) ccAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCt < 1:4299111/72‑1 (MQ=255) cAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCTAGCAGCATAATTGCCGTTTCCTg < 1:8466355/72‑1 (MQ=255) cAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTg < 1:7811947/72‑1 (MQ=255) gCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTggg < 2:8074621/72‑1 (MQ=255) cAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGc > 2:3671195/1‑72 (MQ=255) cAAATCAATCTGATGACTGAACTCCAGCCAGGTCGTCGGTTCGTCGAGCCGCATAATTGCCGTTCCCTGGGc > 1:2563070/1‑72 (MQ=255) aaaTCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTc < 2:2107638/65‑1 (MQ=255) aaaTCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGcc > 1:5144458/1‑72 (MQ=255) aatcaatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCa > 2:5760152/1‑72 (MQ=255) aatcaatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCa > 2:1167131/1‑72 (MQ=255) atcaatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAg < 1:4811877/72‑1 (MQ=255) tcaatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGc < 2:5419039/72‑1 (MQ=255) aatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCAc > 2:8390664/1‑72 (MQ=255) aatcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCAc > 2:5056770/1‑72 (MQ=255) atcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCAcc < 1:6254868/72‑1 (MQ=255) atcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCAcc < 2:8201590/72‑1 (MQ=255) atcGGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCaac < 2:8112652/72‑3 (MQ=255) tcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCCTAATTGCCGTTTCCTGGGCCAGAACCa > 1:2225915/1‑72 (MQ=255) tcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCAccc > 1:3666744/1‑71 (MQ=255) tcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCa < 2:1310704/72‑1 (MQ=255) tcTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCa < 2:1347633/72‑1 (MQ=255) cTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCAt > 2:7329038/1‑72 (MQ=255) tgatgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATc > 2:5645453/1‑72 (MQ=255) gatgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcg < 2:3540890/72‑1 (MQ=255) atgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgc > 1:6964794/1‑72 (MQ=255) atgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgc < 2:1677026/72‑1 (MQ=255) atgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgc > 2:2864501/1‑72 (MQ=255) tgaCTGATATCCAGCCGGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgcg < 1:6350091/72‑1 (MQ=255) tgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgcg > 2:8574447/1‑72 (MQ=255) tgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgcg < 1:6850699/72‑1 (MQ=255) tgaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATcgcg > 2:6344490/1‑72 (MQ=255) gaCTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGa > 1:7088090/1‑72 (MQ=255) gATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCa < 2:7220895/72‑1 (MQ=255) ccagccagGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCAcgctc < 1:8752144/72‑1 (MQ=255) | CGCAAGCGTATAGCCTTTCTCGCGGTTCAGTTCGCTTAACAGTTCCAGCAAATCAATCTGATGACTGATATCCAGCCAGGTCGTGGGTTCGTCGAGCAGCATAATTGCCGTTTCCTGGGCCAGCACCATCGCGATCCACGCTC > NC_012967/602314‑602456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |