New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP002094	705776 =	NA (NA)	109 (1.090)	48/196	1.7	NA	coding (127/261 nt)	LLNZ_03755	IS981 transposase A
	?	CP002094	= 797569	NA (NA)					intergenic (+88/‑293)	LLNZ_04245/LLNZ_04250	putative transposase helper protein for IS712H/terminase small subunit

TGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGT  >  CP002094/705751‑705849                          |                                                                          tgaaacaaTTTATAAATGGATAGCCCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGt  <  1:722160/96‑1 (MQ=0)                          |                                                                          TGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGT  >  CP002094/705751‑705849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.